Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0922 ATGACTAATAGAAGAAGGTCCGGTTTCGGGCCGAGCCGTTTCTACACTTTTTCATGCCTTAGACCACATACCAATGAATCAGAGGCTTCAAATCAAACCCATGGTCCTGGATTTTCCCGAACAGTTCATTGCAACCAACCAAATCTCCATCAGAAGAAGCCATTGAAATACTGCTCGAATTTCATTTCAACCACAAAGTACAATGTACTTACCTTCTTGCCCAAGGCTCTTTTCGAGCAATTCAGGCGAGTTGCTAACTTGTACTTCCTTTTAGCAGCAATTCTCTCTTTCACACCCGTCACACCCTTCTCCCCCATGAGCATGATGGCCCCTTTAGCCTTTGTGGTTGGACTAAGTATGGCCAAAGAAGCCTTAGAGGATTGGCGACGTTTTGTCCAAGATATGAAGGTGAATCTTAGGAAAGCGTATGTTCATAAAGGTGAAGGGATTTTTGGGCATAGACCGTGGCATAAGATTCGGGTTGGAGATGTTGTCAAAGTTGAAAAGGACCAATTCTTTCCGGCTGATTTGCTTCTCTTATCGTCTAGTTATGAAGATGGTATTTGTTATGTAGAGACTATGAATTTAGATGGGGAGACAAACTTGAAAGTGAAGAGATCATTAGAAGTGACATTGTCTTTAGATGATAATGAGTCTTTCAAGGATTTTTCAGGAAAGATCCAATGTGAAGATCCCAACCCAAATCTTTACACCTTTGTGGGTAATCTTGAATATGATTTTCAAGTTTATCCTCTTGACCCTAATCAGATTCTCTTAAGAGATTCAAAGCTTAGGAATACTAGTTATGCTTATGGGGTGGTGATATTTACAGGCCATGATAGCAAAGTGATGCAAAATGCAACCAAATCACCTTCTAAAAGAAGTGGGATAGAAAGAAAAATGGATAAAATCATTTACATCCTTTTCACCCTTCTTGTAATGATCTCATTGATAAGCTCTATTGGTTTTGCCATCAAAACAAAGTACCAAATGCCGGATTGGTGGTACTTAATGCCTGAAAATACCAATAATTTATACGATCCAAAAAGGCCAGCATTATCCGGCCTTTTCCATCTAATTACTGCTCTTATTCTCTACGGATATTTAATACCCATTTCACTCTATGTCTCAATAGAAGTTGTCAAGGTTTTACAAGCCATGTTCATTAACCAAGATATTCACATGTATGATGAAGAGAGTGGAAATACAGCTCAGGCAAGGACCTCAAATTTGAATGAGGAGTTGGGTCAAGTAGATACAATCCTTTCTGATAAAACTGGTACTTTGACTTGCAATCAGATGGATTTTCTCAAGTGTTCAATTTCCGGGATTGCTTATGGTGTTCGCTCTAGTGAAGTAGAACTTGCTGCTGCCAAGCAAATGGCTATTGACCATGAAGAGAATGAGCCAGACTTTTCGAATTATCCAATGCAATCTAAGAAGGGGAAAAGAGGATCTGAAATCGAATTGCAAGAAGTAATCACTTCTGAGGGTGGTAATGGAAAAGATCAGAAAGTTTCCATATAA 1527 39.23 MTNRRRSGFGPSRFYTFSCLRPHTNESEASNQTHGPGFSRTVHCNQPNLHQKKPLKYCSNFISTTKYNVLTFLPKALFEQFRRVANLYFLLAAILSFTPVTPFSPMSMMAPLAFVVGLSMAKEALEDWRRFVQDMKVNLRKAYVHKGEGIFGHRPWHKIRVGDVVKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLEVTLSLDDNESFKDFSGKIQCEDPNPNLYTFVGNLEYDFQVYPLDPNQILLRDSKLRNTSYAYGVVIFTGHDSKVMQNATKSPSKRSGIERKMDKIIYILFTLLVMISLISSIGFAIKTKYQMPDWWYLMPENTNNLYDPKRPALSGLFHLITALILYGYLIPISLYVSIEVVKVLQAMFINQDIHMYDEESGNTAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSISGIAYGVRSSEVELAAAKQMAIDHEENEPDFSNYPMQSKKGKRGSEIELQEVITSEGGNGKDQKVSI 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7520532 7522058 - Conep04aG0095600.1 Cone4ag0922 435900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0922 508 SUPERFAMILY HAD-like 410 449 IPR036412 -
Cone4ag0922 508 Gene3D - 115 289 - -
Cone4ag0922 508 Pfam Phospholipid-translocating ATPase N-terminal 42 108 IPR032631 -
Cone4ag0922 508 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 416 IPR023298 -
Cone4ag0922 508 NCBIfam phospholipid-translocating P-type ATPase 57 468 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Cone4ag0922 508 FunFam Phospholipid-transporting ATPase 118 288 - -
Cone4ag0922 508 MobiDBLite consensus disorder prediction 466 486 - -
Cone4ag0922 508 Gene3D - 419 431 IPR023214 -
Cone4ag0922 508 Gene3D - 432 453 IPR023299 GO:0000166(InterPro)
Cone4ag0922 508 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Cone4ag0922 508 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 27 465 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Cone4ag0922 508 SUPERFAMILY Calcium ATPase, transduction domain A 148 287 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0922 Cone-Chr4:7520532 Cone6ag0484 Cone-Chr6:2412016 9.03E-172 dispersed
Cone4ag0922 Cone-Chr4:7520532 Cone7ag1229 Cone-Chr7:9118286 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0922 K01530 - vvi:100249823 789.645