Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0926 ATGATGAGGAAAGATCAAGGTACTACTTTGATATTTCAACAACAAGTAGGTAATTTGGAGGAGAACATGTTCAATCTGACTTCAGCTTCAAATGATCAAACAAGTCTTTCTTCAGGCAATCGTAATAGAAGTAGTAGTACTACTGCTCGTGATCAGATAATAGGAATCAGCAGCAGCAGCAGTAGCTATATGAATATCGATCATCATCATCAACAACACTATATCTTTTCTACTGATCCAGATCAACCTCCTCAAACTCAACCCCCCAAGAAGAAAAGAAACATTCCAGGCAATCCAGAAGCAGAAGTGATAGCTCTATCACCCAAAACGCTAATGGCAACAAACAGATTCATATGTGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAACCTTCAGCTTCATAGAAGAGGGCATAATCTGCCATGGAAGCTGAAGCAAAGGACAAGCAAAGAGATAAGGAAGAAGGTGTATGTTTGTCCAGAAGCTGGGTGTGTTCATAACGACCCTTCTAGGGCTCTAGGTGACTTGACAGGTATCAAGAAGCACTTTAGCAGGAAGCACGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGAAATATGCAGTTCAATCCGATTGGAAAGCTCATTCTAAGACCTGTGGCACTAAAGAGTACAGATGTGACTGTGGAACTCTTTTCTCAAGGAGGGACAGTTTCATCACTCACAGAGCTTTCTGTGATGCTTTGGCAGAGGAGAGTGCACGAGCCAATAATTTAATCACAACAAACCCACTTCTCTCCTCTTCATCAATCTCACATTTCAACCTTCAATCCCAATTCAATTTTCATGATCTCTCACCTCATCAATTTTCTTTAGAAAAAGAGCAAGACAACTTCAGAACTAGTACTACCAATTTTCCAACATGGTTGTCTTCTCCTCTTGGCCCACAATCAATCCTAGTTAATCAAGATCATCAATTCACTCAACTCCACCATGATCATCAATATCCAAGCCCTAACCCTAATCTTGGCCCTACTAATTTTCTTAGCTACCAAACAACATCTTCACCAAACATGTCAGCCACTGCATTGCTGCAAAAAGCAGCTCAAATGGGTGCAACAATGAGCAGTACCCAAACATCATGTCACGTGTCTGCAGATTCTTCTGCTACGCCTGCAGGCAATAATAACAATAATACTAATATTACTGCTACGAGTTGTAGTAATTTTGGACTTAATTTGGCCTCACGTGAAGAAAAAATGGCCACCACAAGTGGGTTTTCCCATAAAGCATCTGCAACAATTTCTGCAGGGCTTGATAGTACAAATCCTTCCAATTCAGCACTTTTTACTGATTTAATGAATTCTTTGAATAATTCGGCATCTGGGCTTGAAGGGATATCTTCTTTTGAGGAAGCATTTGGTGGGATTTTGATGAATTTCAAAAGTGAAAATACTGGCCAATTAAGTAATAGTAGCACCAATGAAAATGGCAGCGGCAGAGGTGGTAGCAGCATTGGTGGTGGCGGCTATGGTGTAGGCGGCAGTTTAACTGAGGGTTTGACTAGGGATTTCTTGGGATTGAGAGCTTTGTCACATAGTGATATTCTCAACATGGCTGATTTTGGTAATTGCATGAACAGTACTACTAGTACTACTTCTCAAACTAGTCATCAAAATCAAACACAAAGACCATGGCAAGGTTAG 1692 40.54 MMRKDQGTTLIFQQQVGNLEENMFNLTSASNDQTSLSSGNRNRSSSTTARDQIIGISSSSSSYMNIDHHHQQHYIFSTDPDQPPQTQPPKKKRNIPGNPEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEAGCVHNDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAEESARANNLITTNPLLSSSSISHFNLQSQFNFHDLSPHQFSLEKEQDNFRTSTTNFPTWLSSPLGPQSILVNQDHQFTQLHHDHQYPSPNPNLGPTNFLSYQTTSSPNMSATALLQKAAQMGATMSSTQTSCHVSADSSATPAGNNNNNTNITATSCSNFGLNLASREEKMATTSGFSHKASATISAGLDSTNPSNSALFTDLMNSLNNSASGLEGISSFEEAFGGILMNFKSENTGQLSNSSTNENGSGRGGSSIGGGGYGVGGSLTEGLTRDFLGLRALSHSDILNMADFGNCMNSTTSTTSQTSHQNQTQRPWQG 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7625461 7628766 + Conep04aG0096000.1 Cone4ag0926 435904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0926 563 ProSitePatterns Zinc finger C2H2 type domain signature. 119 139 IPR013087 -
Cone4ag0926 563 SMART c2h2final6 193 213 IPR013087 -
Cone4ag0926 563 SMART c2h2final6 158 188 IPR013087 -
Cone4ag0926 563 SMART c2h2final6 117 139 IPR013087 -
Cone4ag0926 563 FunFam protein indeterminate-domain 5, chloroplastic-like 171 250 - -
Cone4ag0926 563 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 192 216 - -
Cone4ag0926 563 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 154 188 - -
Cone4ag0926 563 Gene3D Classic Zinc Finger 166 251 - -
Cone4ag0926 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 139 IPR013087 -
Cone4ag0926 563 MobiDBLite consensus disorder prediction 482 502 - -
Cone4ag0926 563 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 73 541 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone4ag0926 563 MobiDBLite consensus disorder prediction 482 497 - -
Cone4ag0926 563 MobiDBLite consensus disorder prediction 30 52 - -
Cone4ag0926 563 Pfam Zinc finger, C2H2 type 117 139 IPR013087 -
Cone4ag0926 563 Gene3D Classic Zinc Finger 98 163 - -
Cone4ag0926 563 MobiDBLite consensus disorder prediction 543 563 - -
Cone4ag0926 563 MobiDBLite consensus disorder prediction 75 98 - -
Cone4ag0926 563 FunFam protein indeterminate-domain 12-like 96 164 - -
Cone4ag0926 563 SUPERFAMILY beta-beta-alpha zinc fingers 116 213 IPR036236 -
Cone4ag0926 563 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 219 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1288 Cone-Chr11:9550552 Cone4ag0926 Cone-Chr4:7625461 1.04E-86 dispersed
Cone4ag0926 Cone-Chr4:7625461 Cone9ag1538 Cone-Chr9:11184713 5.08E-98 dispersed
Cone17ag0096 Cone-Chr17:514643 Cone4ag0926 Cone-Chr4:7625461 7.29E-110 wgd
Cone4ag0926 Cone-Chr4:7625461 Cone7ag1220 Cone-Chr7:9051517 1.20E-272 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45962 PF13837 Myb_DNA-bind_4 1.80E-20 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0926 K25870 - vvi:109123222 511.916