Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0929 ATGGAGATAAAGCACAAGTTCTTTCATGGAACACTTGAAGCTACCATCTTTCATGCCACGCCATACACACCGCCATCATTTCTTAATTGTATACTTGTAAACGGAAAGCCAGCCTACCTCACCATCAAGATTAACGACAAGGAGGTTGCACAAACTAGCCATGAAAGTGATAGAGTTTGGAATCAAACATTTCAAATTCTATGCGCTCATGCATATGACTCAATCATAACCTTAACCATGAAAACAGCAACATCGACACTAGGAAGAATCGACATTCATACCCACCAAATACTGAAGGAAGAAGCGACTTTCATCAATGACTTCTTTCCTCTCTTAATGGAAAATGGAAAGCTTAGCTCGGAACTTAAGCTCCGGTTCATGTTATGGTTTAAACCGGCTGCAAATGAACTAGGTTGGAAGAAGATAATTGATGATAATGTAGGATATAAAGGGCTTAGAAATGCTACCTTTCCTCAAAGGACTAGTTGTCATGTGACTCTTTATCAGGATGCTCATCATCTTCCCGATTTTCAACCTCCATTTCGATGTTCTAATGCAGCTCCAAGAAATTTATGGGAGGATATTTTCAAAGCCATTGAAGACGCAAGGCATTTGATTTACATTGCAGGCTGGTCTTTCAATCCCAAAACCGTGCTGGTTAGAGACTCTGAAACTGATATTCCTCATGCAATAGGAGTAAAGCTTGGCGAATTGTTGAAGCAAAAAGCAGAAGAAGGTGTAGCGGTGAGAATATTGATTTGGGATGATGAAACATCACTCCCAATCATAAAAAATGTTGGTATAATGAAGACGTATGATGAAGATGCCTTGGCATATTTCACAAACTCCAAAGTCATTTGTAAATTATGCCCTAAATTGCACCCTTTGTCCCCTCCCCTTTTCTCCCATCATCAAAAAACTATAACCGTAGATGCTCAAACCTACATCGATTCAAGTTGCACCCAAGAAATTATAAGCTTCGTTGGCGGATTAGATCTTTGTGGGGGTCGCTATGACACCGAGCAACACTCATTGTTTGGAACCCTCAATGATCATCAAGCTCATTGCTTTGATTTTTATCAAACAAGTATTTCACGTGGGGCTAAGATCAATAATGGAGGACCTAGACAACCATGGCATGATGTTCATGCTTGTGTAAAAGGTGAAGCTGCATGGGATATCTTAACAAATTTTGAGCAAAGATGGAGTAAACAATCTGACCCATCTCTGTTAGTCCCAGCAAGTTCTTTACTTCCTCTCAAACCCCATTTTGATACGAATAAAACCTCCCCAGAAAATGATTGGAACGTGCAAATTTTTCGATCGATCGACCATTTATCAGCAACCCGACTAGTTAAAAGCTTCAATGTGGAAAGAAGCATCCATGAAGCTTATGTGGAAGCAATAAGGAGAGCTGAGAGGTTTATATACATTGAAAATCAGTATTTCATTGGTGGGTGTCAATTTTGGGAGAAAGATAAGAATTGCGGGTGCACAAATTCGATACCAATTGAGATTGCACTTAAGATAGTGAATAAGATTAAGGCAAAGAAGAGATTTACAGTGTATATAGTGATACCAATGTGGCCAGAAGGAGAGCCTGAAAGTGAAGCGGTTGGAGATATATTGTATTGGACTAGAGAAACTATGAAGATGATGTATAAATTGATTGGTGAAGTGATTGAAGAAAGTGGGGAAATGGGTCATCCTAGAGATTACTTGAATTTCTTCTGTCTTGCAAATAGGGAAGTCAAAGGTGAGGGGGAGTTTGTCCCTACACATCCTCCTCAACATGGAACACAATATTGGAATGCCCAAATGCATCGGAGGTTCATGGTCTATGTTCATTCCAAGGTTATGATAGTGGACGACATGTACCTTCTAATAGGATCTGCAAACATAAACCAAAGATCCATGGATGGGCAAAGGGACACAGAAATAGCAATAGGATGCTACCAAACATATGATCACCATTCTCGAACAAAAGAATCGATAAATCGTAAAGACATACATGCATTCCGAATGTCACTCTGGTACGAGCATACACGATGTGTCGAAGAAGACTTATTATCGGAGCCTGAAAGTTTGGAATGCGTTCAAAGAGTAAATTCAATAGCAGATAAAATGTGGGAAATTTACAGCAGTGAAGATACGATAGATATGAATGGAGTTCACCTTGTTAAATATCCTATTGATGTAAACAGGAATGGTTTTGTTGAAGATATGATGGATGGTTCAGATCATTTTCCAGACACCAAGTGTGCTGTAAAGGGCAGGAAATCATTGTTCATACCACCTATCCTCACTACCTAA 2313 39.43 MEIKHKFFHGTLEATIFHATPYTPPSFLNCILVNGKPAYLTIKINDKEVAQTSHESDRVWNQTFQILCAHAYDSIITLTMKTATSTLGRIDIHTHQILKEEATFINDFFPLLMENGKLSSELKLRFMLWFKPAANELGWKKIIDDNVGYKGLRNATFPQRTSCHVTLYQDAHHLPDFQPPFRCSNAAPRNLWEDIFKAIEDARHLIYIAGWSFNPKTVLVRDSETDIPHAIGVKLGELLKQKAEEGVAVRILIWDDETSLPIIKNVGIMKTYDEDALAYFTNSKVICKLCPKLHPLSPPLFSHHQKTITVDAQTYIDSSCTQEIISFVGGLDLCGGRYDTEQHSLFGTLNDHQAHCFDFYQTSISRGAKINNGGPRQPWHDVHACVKGEAAWDILTNFEQRWSKQSDPSLLVPASSLLPLKPHFDTNKTSPENDWNVQIFRSIDHLSATRLVKSFNVERSIHEAYVEAIRRAERFIYIENQYFIGGCQFWEKDKNCGCTNSIPIEIALKIVNKIKAKKRFTVYIVIPMWPEGEPESEAVGDILYWTRETMKMMYKLIGEVIEESGEMGHPRDYLNFFCLANREVKGEGEFVPTHPPQHGTQYWNAQMHRRFMVYVHSKVMIVDDMYLLIGSANINQRSMDGQRDTEIAIGCYQTYDHHSRTKESINRKDIHAFRMSLWYEHTRCVEEDLLSEPESLECVQRVNSIADKMWEIYSSEDTIDMNGVHLVKYPIDVNRNGFVEDMMDGSDHFPDTKCAVKGRKSLFIPPILTT 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7710515 7713586 + Conep04aG0096300.1 Cone4ag0929 435907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0929 770 Gene3D Endonuclease Chain A 178 425 - -
Cone4ag0929 770 SUPERFAMILY Phospholipase D/nuclease 426 687 - -
Cone4ag0929 770 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 611 638 IPR001736 GO:0003824(InterPro)
Cone4ag0929 770 Pfam PLD-like domain 602 650 IPR025202 -
Cone4ag0929 770 SUPERFAMILY Phospholipase D/nuclease 153 414 - -
Cone4ag0929 770 PANTHER PHOSPHOLIPASE D 37 753 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cone4ag0929 770 SMART pld_4 611 638 IPR001736 GO:0003824(InterPro)
Cone4ag0929 770 SMART pld_4 299 337 IPR001736 GO:0003824(InterPro)
Cone4ag0929 770 PIRSF PLD_plant 2 770 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cone4ag0929 770 Gene3D Endonuclease Chain A 426 663 - -
Cone4ag0929 770 Pfam Phospholipase D C terminal 687 759 IPR024632 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0929 Cone-Chr4:7710515 Cone7ag0634 Cone-Chr7:3222065 1.15E-198 dispersed
Cone4ag0929 Cone-Chr4:7710515 Cone2ag0364 Cone-Chr2:1923354 2.41E-204 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0929 K01115 - csv:101206396 1136.71