Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0931 ATGAAGAAGGGGAAGGAGGAGGAAGAGAAAGGCTCTCCTGATGGTGGAGAGAAGGTGGTTGTTGCGGTAAAAGCGGCCAAAGAGATTCCCAAGGCTGCTTTGATGTGGGCTCTGGCTCATGTTGTCCAGCCCAGTGATTACATAACTCTGCTCGTTGTTGTGCCACCTCAAAGTTCCGGCAGAAAATTTTTGAGGTTTCCGAGATTTTCTGGGGATTGTGCTAATAATAGTAATAATAACAGAAAGTCTCATTCAGGAGCAAGTTCTGAGCAGAAATGTGAGATAGCGGATTCGTGTTCCCAAATGATCCTTCAGCTTCATAATGTTTATGATCAAAATAAGATAAATGTTAAGATCAAAATTCTTTTGGGATCGCTCAATGGTGCAGTTGCTGCAGAGGTTAAGAAGGCTCAAGCCACTTGGGTTGTACTTGACAAGCACCTGAAAAATGAAGAGAAATGCTGCATGGAAGAGCTGCAATGCAACATTGTGGTTATGAAACGATCGCAACCGAAAGTTCTCCGCCTGAATTTGGTGGGGTCCCCTCCAAAGAAGACTGAGGTTTCCTCCATTCCATCCCATGCGCTTGATGAGAGCTCTAAAATTGTGAATGAGAATTTGAAAAATTCACTTAATTCCATTTGTGCCCTGAAAGGAACTACTACTCCAAGTAGTAGCCCAGAATTAAGTATTCCATTTACTGCCACTGAAGCAGGAACCTCATCTGTATCAAGCTCCAATCCAGGAACTTCACCTATATTAATCTCCAACATAAACAGAGATATTATGAAGAAAGAGGAAGCATCAATAGTAGTACTCATCAAAGAGAATCATGAAAACAGATCCAATTCTGACTTGGAAAATGAAATTTTATCTACGACTTCTTTGAACTCAAGATACCAACCAAGGGTGAAAGAAGTTTTACCTTCTCATGCTCAATTTCCAAAGCTTGATAATAGGACAGATATAGATTTCAGTGGAAGAAATGTACGGGAAGTGGTTTCTTTGTCAAGAAACATGCCTCTGGGCCCTCCTCCATTATGTTCCTTTTGTCAACATAAGGCGCCGGTTTTCGGAAACCCTCCAAGGTGGTTCAGTTATGCTGAGCTGGAGCTTGCTACTAACGGGTTTTCACAAGAAAATTTCTTGGCGGAAGGAGGGTTTGGATCGGTTTATAGAGGAGTACTGTCTGATGGTCAAATGGTAGCTGTTAAGCAGCATAAGCTGGCTAGCTCTCAAGGGGACCATGAATTTTGCTCGGAAGTAGAGGTTCTTAGCTGTGCTCAGCATCGGAATGTGGTCCTGTTGATTGGCTTTTGTATCGAGGACAAAAGAAGATTGCTGGTTTATGAATATATCTGTAATGGTTCACTGGATTCTCATCTATATGGACGGAAGTGGGACCCACTAGAATGGTCTGCAAGGCAGAAAATAGCTGTGGGAGCTGCACGGGGGCTGAGATATCTTCATGAAGAATGTAGAGTGGGGTGTATAGTCCACCGTGACATGCGGCCAAATAACATTATTGTAAACCATGATTTCGAACCACTGGTTGGGGACTTTGGCCTGGCAAGGTGGCAGCCAGATGGAGATATGGCTGTTGAAACCAGAGTGATTGGAACTTTCGGGTATTTGGCTCCAGAGTATGCTCAAAGTGGCCAAATAACCGAAAAAGCTGATGTTTACTCCTTTGGGGTGGTACTGGTTGAGCTAATCACGGGCCGAAAAGCAGTGGACCTCAAGCGACCCAAGGGCCAACAATGTCTCGCCGAGTGGGCACGACCTTTATTAGAAGAGTTTTCTGTAGATAAGCTGCTGGACGCAAGGTTGGGGAATAGTTATTCCGAGCATGAAGTCTACTGCATGGTCCATGCTGCTTCGTTATGCATTCAACGCAATCCGAATGCTAGGCCCCGCATGTCACAGGTGTTGCGAATTCTTGAAGGCAATTTGCTTATGGATGGTAAATACATGTCAAAAACCGGGAATGATGTGGGAAATAGGAGTGGCCGGATTTGGACCGAACAGAAACATCAACAACGATATGCTTGTTTACTATTGGATGATACGTAA 2073 43.99 MKKGKEEEEKGSPDGGEKVVVAVKAAKEIPKAALMWALAHVVQPSDYITLLVVVPPQSSGRKFLRFPRFSGDCANNSNNNRKSHSGASSEQKCEIADSCSQMILQLHNVYDQNKINVKIKILLGSLNGAVAAEVKKAQATWVVLDKHLKNEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSPPKKTEVSSIPSHALDESSKIVNENLKNSLNSICALKGTTTPSSSPELSIPFTATEAGTSSVSSSNPGTSPILISNINRDIMKKEEASIVVLIKENHENRSNSDLENEILSTTSLNSRYQPRVKEVLPSHAQFPKLDNRTDIDFSGRNVREVVSLSRNMPLGPPPLCSFCQHKAPVFGNPPRWFSYAELELATNGFSQENFLAEGGFGSVYRGVLSDGQMVAVKQHKLASSQGDHEFCSEVEVLSCAQHRNVVLLIGFCIEDKRRLLVYEYICNGSLDSHLYGRKWDPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNIIVNHDFEPLVGDFGLARWQPDGDMAVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLKRPKGQQCLAEWARPLLEEFSVDKLLDARLGNSYSEHEVYCMVHAASLCIQRNPNARPRMSQVLRILEGNLLMDGKYMSKTGNDVGNRSGRIWTEQKHQQRYACLLLDDT 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7749425 7754131 - Conep04aG0096500.1 Cone4ag0931 435909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0931 690 FunFam Dual-specific kinase DSK1-like 10 167 - -
Cone4ag0931 690 ProSiteProfiles Protein kinase domain profile. 377 653 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0931 690 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 349 452 - -
Cone4ag0931 690 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 453 656 - -
Cone4ag0931 690 Pfam Protein tyrosine and serine/threonine kinase 380 646 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0931 690 Gene3D Phosphorylase Kinase; domain 1 349 452 - -
Cone4ag0931 690 PANTHER OS01G0750732 PROTEIN 148 655 IPR050885 -
Cone4ag0931 690 SUPERFAMILY Protein kinase-like (PK-like) 361 649 IPR011009 -
Cone4ag0931 690 ProSitePatterns Tyrosine protein kinases specific active-site signature. 498 510 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0931 690 CDD STKc_IRAK 383 649 - -
Cone4ag0931 690 Gene3D Transferase(Phosphotransferase) domain 1 453 660 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0931 Cone-Chr4:7749425 Cone7ag0733 Cone-Chr7:4436877 3.71E-224 dispersed
Cone17ag0111 Cone-Chr17:581592 Cone4ag0931 Cone-Chr4:7749425 0 wgd
Cone20ag1297 Cone-Chr20:8447839 Cone4ag0931 Cone-Chr4:7749425 0 wgd
Cone4ag0787 Cone-Chr4:4700713 Cone4ag0931 Cone-Chr4:7749425 7.18E-246 wgd
Cone4ag0931 Cone-Chr4:7749425 Cone7ag1209 Cone-Chr7:8992308 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82762 PF00071 Ras 2.00E-54 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0931 - - - 0.0