Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0941 ATGGCGTCTCAGCTCAAACCCAGCTTCCTCTTCGCCCTTCTTGCTACTCTCTCTCTAATTTCTCTAGTTCTTGCCCAGAGCGATCAAACCGGGTTCATTAGCTTAGACTGTGGATTAACATCAAACGAAACCTATGTAGAGCCGATTACTGGCTTAAAGTACACGACAGATGCGAATTACATCGACACTGGAGAATCTCATTCGGTATCATCTGATTACTTAACTAAATCTCTCGAACAACAGCTTGCAACTATCAGAAGCTTCCCATATGGAGTTAGAAACTGTTACAATATAAGCAGTGTCGTAAAAAACACCCGATACTTGATCCGAGCTAGCTTTTTATATGCAAATTACGACAACCGGAACTTTACGCCGTCGTTCGAACTCCACTTTGGTCCGAATCTTTGGGATTCGATCAATTTTACTGAAGTGAATACTATTCTACACAAGGAGATTATTCACATTCCTTCCTCAAATTATGTTGAGATTTGCCTTGTGAACACGAATGATGGGAACCCTTTTATTTCATCGATTGAGTTAAGGCCCCTCAAAAACACTACTTATGTAACTCAAGGTGGAGCCTCTTTGAGTACGTTCTTGCGGCTTGATATTGCTTCCACAACCAATAAGAGTTACAGGTACAACGATGATGTATTTGATAGAATATGGGTCCCAGCAGTTCCCAGAGAGGATTGGACAACCAAAAGCACCAATTTAACAATAGATCCTAACACACACATTGACTACCAACCACCGCGCCCGGTCATGGCCTCGGCTGCGATCCCCAAAAATGAAAGTGCACCTATGGAATTCATATTGGCTGCACCCGATAATACCACCGAATTCTACGTCTACATGTACTTTGTGGAATTCGATGTCCTTACGGCCAATGAGAATCGATCATTCACCATCTTACTAAATGGGCTTCCTTGGCTAACTTCGAACGTCCTTATGAGGTACCTTTCTTCCACCATCGCTTATAGCATCAACCCGATCAGCGGGAGCCAACTTGAATTTTCCCTCATTAGTACTGACGGCTCCACTCTTCCACCCATTCTCAATGCTATTGAAATTTACACGGTCATAAATTTCCCTCAATCTGAAACTGACCAAGGAGATGTGGGAGCAATGCTAAACATAAAGGGTGATTATGGAATAAAGAAAAATTGGCAAGGAGATCCTTGTGTGCCAATAGCTTATATCTGGGAAGGGATTGGCTGTAATAACTCTACTGGGTCTGATCCTCCTAAAATTAACTCATTGAACTTATCGTCTAGTGAATTGACTGGACAAATAACTTCGGATTTTACTAATCTGCAATTCCTTGAGATCTTGGATCTATCTAATAATAACTTAAGTGGGCCGGTGCCTGATTTTCTCGCTCAATTGTCTAACCTGAGGACTCTAAATTTGAGAAATAACAACTTTTCGGGAACCATTCCAGCTGGGCTCACTAATAAGACCTCGCTAACAATTATTGTGGACGGAAATCCGAATCTAGGATTGACTACAAACACTACCAGGAATGGGAAGAAGAAGAAGAGCAGTGTTGTTGGACCGGTCGTAGGATCCGTTGTAGGAGTTATTGTTGTTGCATTGATCATTGCGGCTGCTATCATTTATTTCCGTAAGAAGAAAAATCCACAGGGAGCAACAAAGATTGATGCAAGAAGTACTACTAATAGCCAAGCAAGTCCCGGACCGTGGGTAACGGCAAAACGAGATTATTCGTATTCAGAAATCTTGAGCATGACCAACAACTTTGCAACATTGCTGGGTGAAGGTGGATTTGGAAAAGTGTACCATGGTCGTATAGACAAAACCGAGGTGGCGGTAAAGATGCTCTCTGAAAAATCAGCTCAAGGCTATCAACAATTCCAGGCAGAGGTTGAGCTACTTCTGAGAGTTCATCATAGGAACTTGACAAGCCTTGTTGGATACTGTAATGAAGGGACCTCAATGGGCCTAATCTATGAATATATGGGAAGAGGAGATTTGGGACAACTTCTTTCTGGTCGCGAGGGAGGTATGTTGGGATGGAAAGATAGACTCCAAATAGCTGTGGATTCAGCTCAAGGGTTGGAATATTTGCATTATGGGTGCAAGCCTGGTATAGTACATAGGGACGTGAAGTGTACAAACATCTTGTTGAACGAAAATTTCCAAGCAAAGATAGCCGACTTTGGTCTCTCCAGAGCTTTTCCGATGGACGGCCATGCCACCCATATCACAACCAACGTTGTTGGCACTCCTGGCTACCTTGACCCTGAGTACTACACAACATACAGATTAACTGAGAAGAGCGACGTGTACAGTTTTGGAATTGTTTTACTGGAAATTATCACAGGAAGAGCAGTAATCACAAAAACTCACGAGAAGAGTCACATAAGTCAGTGGGTTGACTTCAAGCTTGGTCAAGGAGATATCCATACCATCATTGATGCAAGGTTAACAGATGATTTTGATGGGAACTCTGTTTGGAAAGCTGTTGAAGTAGCAATGTCTTGCGCATCTCATAATTCTTCAAGACGACCCACTATGAGTCTTGTCGCCACTGAGCTTAAGGAGTGTTTAGCTATTGAATTGTCTCGCTCAGAAGGTCGCCAAACAGATCCTCTCTTAACTTCGTCCTCTTCCTATTTCGATTCAGAACTTGGTCCAACTGCAAGATAA 2673 42.61 MASQLKPSFLFALLATLSLISLVLAQSDQTGFISLDCGLTSNETYVEPITGLKYTTDANYIDTGESHSVSSDYLTKSLEQQLATIRSFPYGVRNCYNISSVVKNTRYLIRASFLYANYDNRNFTPSFELHFGPNLWDSINFTEVNTILHKEIIHIPSSNYVEICLVNTNDGNPFISSIELRPLKNTTYVTQGGASLSTFLRLDIASTTNKSYRYNDDVFDRIWVPAVPREDWTTKSTNLTIDPNTHIDYQPPRPVMASAAIPKNESAPMEFILAAPDNTTEFYVYMYFVEFDVLTANENRSFTILLNGLPWLTSNVLMRYLSSTIAYSINPISGSQLEFSLISTDGSTLPPILNAIEIYTVINFPQSETDQGDVGAMLNIKGDYGIKKNWQGDPCVPIAYIWEGIGCNNSTGSDPPKINSLNLSSSELTGQITSDFTNLQFLEILDLSNNNLSGPVPDFLAQLSNLRTLNLRNNNFSGTIPAGLTNKTSLTIIVDGNPNLGLTTNTTRNGKKKKSSVVGPVVGSVVGVIVVALIIAAAIIYFRKKKNPQGATKIDARSTTNSQASPGPWVTAKRDYSYSEILSMTNNFATLLGEGGFGKVYHGRIDKTEVAVKMLSEKSAQGYQQFQAEVELLLRVHHRNLTSLVGYCNEGTSMGLIYEYMGRGDLGQLLSGREGGMLGWKDRLQIAVDSAQGLEYLHYGCKPGIVHRDVKCTNILLNENFQAKIADFGLSRAFPMDGHATHITTNVVGTPGYLDPEYYTTYRLTEKSDVYSFGIVLLEIITGRAVITKTHEKSHISQWVDFKLGQGDIHTIIDARLTDDFDGNSVWKAVEVAMSCASHNSSRRPTMSLVATELKECLAIELSRSEGRQTDPLLTSSSSYFDSELGPTAR 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7887383 7891613 - Conep04aG0097500.1 Cone4ag0941 435919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0941 890 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0941 890 MobiDBLite consensus disorder prediction 869 890 - -
Cone4ag0941 890 Gene3D Phosphorylase Kinase; domain 1 573 660 - -
Cone4ag0941 890 Gene3D Ribonuclease Inhibitor 376 502 IPR032675 -
Cone4ag0941 890 Pfam Malectin-like domain 35 361 IPR024788 -
Cone4ag0941 890 SUPERFAMILY L domain-like 412 494 - -
Cone4ag0941 890 ProSitePatterns Protein kinases ATP-binding region signature. 592 613 IPR017441 GO:0005524(InterPro)
Cone4ag0941 890 CDD STKc_IRAK 592 856 - -
Cone4ag0941 890 FunFam Leucine-rich repeat receptor-like protein kinase 560 660 - -
Cone4ag0941 890 Pfam Protein tyrosine and serine/threonine kinase 589 798 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0941 890 ProSiteProfiles Protein kinase domain profile. 586 858 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0941 890 SMART serkin_6 586 858 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0941 890 Gene3D Transferase(Phosphotransferase) domain 1 661 872 - -
Cone4ag0941 890 SUPERFAMILY Protein kinase-like (PK-like) 565 852 IPR011009 -
Cone4ag0941 890 PANTHER OS07G0107800 PROTEIN-RELATED 25 863 - -
Cone4ag0941 890 FunFam Leucine-rich repeat receptor-like kinase 372 503 - -
Cone4ag0941 890 Pfam Leucine rich repeat 416 476 IPR001611 GO:0005515(InterPro)
Cone4ag0941 890 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 661 867 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1285 Cone-Chr20:8393403 Cone4ag0941 Cone-Chr4:7887383 2.48E-276 dispersed
Cone4ag0941 Cone-Chr4:7887383 Cone7ag1196 Cone-Chr7:8898235 0 dispersed
Cone4ag0940 Cone-Chr4:7847132 Cone4ag0941 Cone-Chr4:7887383 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82764 PF00743 FMO-like 2.10E-28 CL0063 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0941 - - - 0.0