Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0949 ATGGCTTACGACCCGCTCAACTCAGAGACTGAGTCGAGCTTTACCATCATCGCCTCCTCCTCTACTTGTTCATCATCATCACCATCTTCATCGGTTCCTAACGGGCTATCTGGACCGGGTCCCTCCCAGACTCGGCCTAAGAGATCCCGAGATACTAATGACGATAACAATAGTAAACATCCGGTTTATCGGGGGGTCCGAATGAGGACGTGGGGCAAATGGGTATCCGAAATCAGAGAACCGAGAAAGAAGAACCGGATCTGGCTCGGCACTTTCTCCACGCCTGAAATGGCAGCGCGTGCACATGACGTGGCTGCTCTAACCATCAAAGGTGCCAGCTCAGCAATCCTCAACTTCCCCGAACTCGCCGACTCGCTCCCCCGACCCGCTTCCAACTCCCCGCGGGATGTCCAGGCTGCCGCTGCCAAAGCCGCCATCATGGAGCTTCCGACTCCGCATCCACCTCGGCACCCTCCTCCTCCTCCTCCTCCTTCGTCCTCGTCGGAGTCATCATCATCATCTTCTTCTTCTTCTTCGCCGGAGGAGCTGAGTGAGATAGTGGAGCTGCCGAGCTTGGGAACGAGTTACGAGTCGGCCGAGTCGGGAAAGGAGTTCGTATTTGTTGACTCGGTGGATGGTTGGCTGTATCCCCACTCGTGGCCGTGGTGTCACAGTATCATTGATGACGATGATTTTGGATACTTGTTTTGGCAACATTAA 720 54.86 MAYDPLNSETESSFTIIASSSTCSSSSPSSSVPNGLSGPGPSQTRPKRSRDTNDDNNSKHPVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFSTPEMAARAHDVAALTIKGASSAILNFPELADSLPRPASNSPRDVQAAAAKAAIMELPTPHPPRHPPPPPPPSSSSESSSSSSSSSSPEELSEIVELPSLGTSYESAESGKEFVFVDSVDGWLYPHSWPWCHSIIDDDDFGYLFWQH 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8070103 8071187 + Conep04aG0098400.1 Cone4ag0949 435927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0949 239 CDD AP2 63 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0949 239 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0949 239 FunFam Ethylene-responsive transcription factor 2 61 121 - -
Cone4ag0949 239 MobiDBLite consensus disorder prediction 168 184 - -
Cone4ag0949 239 MobiDBLite consensus disorder prediction 149 188 - -
Cone4ag0949 239 MobiDBLite consensus disorder prediction 18 46 - -
Cone4ag0949 239 SMART rav1_2 62 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0949 239 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0949 239 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0949 239 MobiDBLite consensus disorder prediction 18 64 - -
Cone4ag0949 239 Pfam AP2 domain 61 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0949 239 MobiDBLite consensus disorder prediction 47 62 - -
Cone4ag0949 239 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677(InterPro)
Cone4ag0949 239 Gene3D AP2/ERF domain 62 121 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0949 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 43 210 IPR051032 -
Cone4ag0949 239 MobiDBLite consensus disorder prediction 151 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0949 Cone-Chr4:8070103 Cone7ag0894 Cone-Chr7:6995942 3.27E-41 dispersed
Cone17ag1123 Cone-Chr17:8317270 Cone4ag0949 Cone-Chr4:8070103 3.11E-53 wgd
Cone4ag0772 Cone-Chr4:4457176 Cone4ag0949 Cone-Chr4:8070103 1.91E-63 wgd
Cone4ag0949 Cone-Chr4:8070103 Cone7ag0709 Cone-Chr7:4093784 4.75E-66 wgd
Cone4ag0949 Cone-Chr4:8070103 Cone7ag1181 Cone-Chr7:8804049 6.83E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45965 PF01171 ATP_bind_3 2.00E-38 CL0039 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0949 K09286 - mdm:103426648 238.81