Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0962 ATGAAGAATTTGATAATACTTTTCTTCTTCATTTCCCTCTTCAGCCATGGAACTTACTCCGAACCACTTTATGATCAAGAGCAAGCAGTCCTACTATCCTTAGCCAAATACTGGCAAAATCCACCGTCCATAAGCCACTGGAGTTCATCATCCAACGTCTCTCATTGCTCCTGGCCAGAAATCAAATGCACAAACAATTTCGTCACTCAACTCTCCATCATAGACCTGAACATAACACAAACTATCCCACCTTTCATTTGTGACTTGAAAAATCTGACCCACCTTGATCTCCAATACAATTACATTCCCGGCCCATTCCCTACAATTCTCTACAACTGTTCGAAGCTTCAATACCTTGATCTTTCCCAAAACATCCTTGACGGCCCCATTCCGGAAGATATTGACCGCTTATCCGGGCTTAATTTCCTCAGCCTCTTAGCTAACAACTTTTTCGGCGATATTCCAGCATCCATTGGACGATTGTCGGAGCTTAGATTTCTTGATCTTCGAGGGAACAAGTTTAACGGTACTTACCCGGAGGATATAGGTAACTTGTCGAATTTAGAAGAGCTTAAAATGGCTTATAATTTGAATTTGAAGGCAATGGAGATGCCTTCAAGTTTTACCAAGTTGAAGAAATTGAAGATGCTATTGATGACTAGCTGCAATTTGATCGGGGAAATCCCGGAAAATATTGGTGACATGGAAGCTCTCAACATTTTGGACTTATCTCGGAATAGTCTTACCGGGAATTTACCAAGCAGTTTGTTTTTGTTGAAAAATCTCAGTTTACTTTATTTATTCAAGAATGAACTCTCTGGTGAAATTCCCATAAAGATTGAAGCTTCCGAGTTAACCGAGTTTGACCTTTCAGAAAACAATTTGACCGGGAAAATCCCGGATGATGTCGGGAACCTTCAGAAGCTGACGGTTTTGAATTTATGTTCGAATAAGCTATCAGGTGAGATTCCAGAAAGCATAGGCCGTCTTCCAGGTTTGAAAACCGTCAAGCTGTATACAAACAATTTGTCGGGCAGTTTGCCTCCAGATTTCGGGCGGTTTTCGGAGCTTGTAGGGTTCGAGGTTTCTTCGAATCAGTTAACGGGCAGTCTTCCGGAACATCTATGCAATGGAGGTAAGTTAGTAGGCTTAGTAGCTTTTGAGAATAATCTTAGTGGTGAAGTGCCGGAATCGCTCGGAAATTGCAATAGTTTGTTTACTCTTATGATTCACAGCAACAACTTTTCCGGGAATTTACCGAGCGGTTTATGGACTTTGACGAATATGTCTTATGTAATGATCCACCGCAACTCTTTTTCCGGGGAGCTTCCGGAGAAAGTTTCGGGGAATTTCTTATGGTTAGAAATCAGCAACAACAGATTCTCTGGGAAGATTCCAATCGGGGTATCTTCTTGGAGGAAGTTGGTTGTTTTTGATGCTGGGAATAATATGTTTACGGGCTCGATCCCTCAAGAGCTCACAGCTCTTCAAGAATTAACCAAGCTTTCTCTTCATCATAATGAATTCGACGGTGAATTACCGAAGAAAATTATTTCGTGGACATCTTTAACGAGTCTTGATCTCGGTCACAATAGGATTTCTGGGAAAATCCCGGATGGGCTTGGTCACTTACCTCGTCTTACAGATTTAGACCTTTCCGACAATCAATTTTCCGGGGAGATTCCATCACAACTTGGTCTTCTAATGTTCACTTCCCTTAACCTTTCTTCTAATCATTTGACTGGAAATATCCCTAATGAATTGGAGAATTCAGCCTATTCAATGAGCTTCTTGAACAATCCGGGACTCTGCGGGAACAACCCACTTATAAACTTCAACCGTTGCGATTCCAGGTTTCAAAAATCAAGGAAGACATCGTCACGTGATCTTGCTATGATCATAGGGTTGAGCATTTCAGTTTTTGTGTTGTCTGTGATATTTTCGTTCCTCATAGTAAGATTATATTCAAAGAGAAAAGGAAGTAATTTAGTATGGAATGTGACCTCATTTCAAAGGTTGAACTTCACGGAGTCGAACATTTTGTCGGGATTGATTGAAAACAACACGATTGGAAGTGGAGGGTCGGGGAAAGTTTACCGAGTCCCAGTAAATCGTCTAGGAGACATTGTGGCAGTGAAGAGGATATGGAATAACAGAAACCTCGAGGAGAAACTCGAGAAAGAGTTCATAGCGGAAGTTAAGGTACTAAGCTCGATCCGACATGCTAACGTAGTCAAGTTGCTATGTTGTATTTCGAGTGATGACTCGAAACTTATAGTCTATGAGTACATGGAAAATCACAGCTTGGATAGATGGCTTCATGGTAAGAGTAGATTGGTTGGCAATGATGTGCTTGATTGGCCAAAGAGATATCGTATTGCATTAGGGGCAGCTCAAGGGTTGTGCTACATGCACCATGATTGTGAGAGACCTATTATTCACAGAGACGTGAAATCGAGTAATATTTTGTTGGATTCTGAGTTTAATGCAAAGATTTCCGATTTCGGTCTAGCAAAGATGTTGATCAAGCAAGGTGAACCGGCCTCCATGTCGGCTGTTGCAGGCACCTTCGGCTACATGGCCCCAGAATATGCTCATACAACAAGAGTGACCGAGAAAATAGACGTATACAGTTTTGGAGTCGTTCTTCTAGAGCTAGCAACTGGACGGGAAGCTCATGAAGGTGGGCACCACACCTCCCTTGCGGAATGGGCCCTACAACATATGCACCACGGAAATGCCATTGACGATCTTTTGGATGAGAAGATTAAGAAAGAGTGTTATGTAGCCGGAATGTGTCATGTTTTCAGGCTCGGAGTGATTTGTACCGCGACATTGCCAGAAAACCGGCCTTCCATGAAAGAAGCTCTGCAGATTTTGCTCCGTCTTAGAGTACTACAAGGAGGAGAGAAGAAAAATAATGAATATGAAGCTGCTCCTCTACTTAAGAATTCAAAGAGGGAGAATAAAGAAGAGGGTGATCAGAATAAATAA 2994 41.92 MKNLIILFFFISLFSHGTYSEPLYDQEQAVLLSLAKYWQNPPSISHWSSSSNVSHCSWPEIKCTNNFVTQLSIIDLNITQTIPPFICDLKNLTHLDLQYNYIPGPFPTILYNCSKLQYLDLSQNILDGPIPEDIDRLSGLNFLSLLANNFFGDIPASIGRLSELRFLDLRGNKFNGTYPEDIGNLSNLEELKMAYNLNLKAMEMPSSFTKLKKLKMLLMTSCNLIGEIPENIGDMEALNILDLSRNSLTGNLPSSLFLLKNLSLLYLFKNELSGEIPIKIEASELTEFDLSENNLTGKIPDDVGNLQKLTVLNLCSNKLSGEIPESIGRLPGLKTVKLYTNNLSGSLPPDFGRFSELVGFEVSSNQLTGSLPEHLCNGGKLVGLVAFENNLSGEVPESLGNCNSLFTLMIHSNNFSGNLPSGLWTLTNMSYVMIHRNSFSGELPEKVSGNFLWLEISNNRFSGKIPIGVSSWRKLVVFDAGNNMFTGSIPQELTALQELTKLSLHHNEFDGELPKKIISWTSLTSLDLGHNRISGKIPDGLGHLPRLTDLDLSDNQFSGEIPSQLGLLMFTSLNLSSNHLTGNIPNELENSAYSMSFLNNPGLCGNNPLINFNRCDSRFQKSRKTSSRDLAMIIGLSISVFVLSVIFSFLIVRLYSKRKGSNLVWNVTSFQRLNFTESNILSGLIENNTIGSGGSGKVYRVPVNRLGDIVAVKRIWNNRNLEEKLEKEFIAEVKVLSSIRHANVVKLLCCISSDDSKLIVYEYMENHSLDRWLHGKSRLVGNDVLDWPKRYRIALGAAQGLCYMHHDCERPIIHRDVKSSNILLDSEFNAKISDFGLAKMLIKQGEPASMSAVAGTFGYMAPEYAHTTRVTEKIDVYSFGVVLLELATGREAHEGGHHTSLAEWALQHMHHGNAIDDLLDEKIKKECYVAGMCHVFRLGVICTATLPENRPSMKEALQILLRLRVLQGGEKKNNEYEAAPLLKNSKRENKEEGDQNK 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8225421 8228986 + Conep04aG0099700.1 Cone4ag0962 435940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0962 997 MobiDBLite consensus disorder prediction 981 997 - -
Cone4ag0962 997 FunFam Kinase family with leucine-rich repeat domain-containing protein 764 977 - -
Cone4ag0962 997 Gene3D Phosphorylase Kinase; domain 1 667 763 - -
Cone4ag0962 997 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524(InterPro)
Cone4ag0962 997 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 24 963 IPR050647 -
Cone4ag0962 997 ProSiteProfiles Protein kinase domain profile. 684 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0962 997 SMART LRR_sd22_2 89 121 - -
Cone4ag0962 997 SMART LRR_sd22_2 161 187 - -
Cone4ag0962 997 SMART LRR_sd22_2 520 543 - -
Cone4ag0962 997 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 281 375 - -
Cone4ag0962 997 Pfam Leucine rich repeat 91 149 IPR001611 GO:0005515(InterPro)
Cone4ag0962 997 Pfam Leucine rich repeat 519 557 IPR001611 GO:0005515(InterPro)
Cone4ag0962 997 SUPERFAMILY RNI-like 284 603 - -
Cone4ag0962 997 CDD STKc_IRAK 690 963 - -
Cone4ag0962 997 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515(InterPro)
Cone4ag0962 997 Pfam Leucine Rich Repeat 308 330 IPR001611 GO:0005515(InterPro)
Cone4ag0962 997 Pfam Leucine Rich Repeat 238 257 IPR001611 GO:0005515(InterPro)
Cone4ag0962 997 Pfam Leucine Rich Repeat 285 306 IPR001611 GO:0005515(InterPro)
Cone4ag0962 997 Pfam Leucine Rich Repeat 571 590 IPR001611 GO:0005515(InterPro)
Cone4ag0962 997 Gene3D Ribonuclease Inhibitor 179 282 IPR032675 -
Cone4ag0962 997 SUPERFAMILY Protein kinase-like (PK-like) 675 961 IPR011009 -
Cone4ag0962 997 MobiDBLite consensus disorder prediction 974 997 - -
Cone4ag0962 997 FunFam Receptor-like protein kinase HSL1 664 763 - -
Cone4ag0962 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0962 997 Pfam Protein kinase domain 687 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0962 997 SMART serkin_6 684 961 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0962 997 Gene3D Ribonuclease Inhibitor 375 623 IPR032675 -
Cone4ag0962 997 FunFam Leucine-rich receptor-like protein kinase family protein 376 617 - -
Cone4ag0962 997 FunFam Receptor-like protein kinase HSL1 isoform A 24 176 - -
Cone4ag0962 997 Gene3D Ribonuclease Inhibitor 24 178 IPR032675 -
Cone4ag0962 997 Gene3D Ribonuclease Inhibitor 283 374 IPR032675 -
Cone4ag0962 997 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 181 280 - -
Cone4ag0962 997 ProSiteProfiles Leucine-rich repeat profile. 522 545 IPR001611 GO:0005515(InterPro)
Cone4ag0962 997 Gene3D Transferase(Phosphotransferase) domain 1 764 987 - -
Cone4ag0962 997 SMART LRR_typ_2 496 520 IPR003591 -
Cone4ag0962 997 SMART LRR_typ_2 89 112 IPR003591 -
Cone4ag0962 997 SMART LRR_typ_2 521 543 IPR003591 -
Cone4ag0962 997 SMART LRR_typ_2 544 568 IPR003591 -
Cone4ag0962 997 SMART LRR_typ_2 306 330 IPR003591 -
Cone4ag0962 997 SMART LRR_typ_2 235 259 IPR003591 -
Cone4ag0962 997 SMART LRR_typ_2 161 185 IPR003591 -
Cone4ag0962 997 SUPERFAMILY L domain-like 36 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0962 Cone-Chr4:8225421 Cone6ag0989 Cone-Chr6:5425703 2.23E-76 dispersed
Cone15ag0897 Cone-Chr15:6996446 Cone4ag0962 Cone-Chr4:8225421 1.35E-56 transposed
Cone17ag1151 Cone-Chr17:8480964 Cone4ag0962 Cone-Chr4:8225421 3.94E-68 wgd
Cone4ag0962 Cone-Chr4:8225421 Cone7ag1170 Cone-Chr7:8729005 3.38E-258 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82766 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0962 - - - 0.0