Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0965 ATGTCAAAATTACAAAAAACTTTCGGCATTTCTATCATCAACGTTCATCTTGTTCTTATACTTGTTCTCTTGCTCAATCCGAAACGTACCCAATGTCACACCAAGGGACTCCGACCCAGAAAATCTATTCCAAAAAGGCCACCGGAAATAAACACAACACAAACCCAGTTAGCAGAACAACAATTCATGAAGTGGGTCAAATTTGTAGGAAGCTTAAAACACTCAAGATTCAAGACAGCTAAAAACAAGGTCTTTCCCTCTTATTCTCTCACTGTCGATAAGGACCCGGTGGTTGGAGACTTCATGTCAATTCAAGATGCGATTGATTCTCTACCGTTTATAAATCTTGTGAGAGTTGTGATCAAAGTGCATGCAGGAGTTTACACAGAGAAGGTTACTATACCTCCATTGAAATCGTTTATATCAATAGAAGGGGCAGGAGCAGATAAGACTATTGTTCAATGGGGAGACACTGCTCAAACACCTGGTCCCAAAGGGCAGCCCATGGGAACCTATAGTTCAGCCACTTTTGCCGTTAATGCCCCTTATTTCATTGCCAAGAACATAACCTTCAAGAACACGACCCCTTTACCAGCTCCAGGAGCTCAGGGAAAGCAAGCAGTGGCGTTTAGGATATCAGCTGACACGGCCGCGTTCATAGGATGCAAATTTTTAGGAGCACAAGACACATTATACGATCATTTGGGCCGGCATTATTACAAGGACTGTTACATTGAAGGTTCGGTCGATTTCATATTCGGCAATGGTCTCTCTTTGTTCGAGGGATGTCACGTACATGCGATAGCACAGTATATGGGGGCCTTGACGGCACAAAGAAGGAGTAGTATGTTGGAGGACACCGGCTTTTCATTTGTGAACTGTAAGGTCACGGGCTCAGGAGCATTGTACCTAGGAAGGGCATGGGGTCCCTTCTCCAGAGTAGTCTTTGCTTATACATATATGGACAACATCATCATCCCCAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAGATGACTGTATTTTATGGGCAATATAGGTGCACGGGAGAAGGAGCAAGCTTTGCAGGAAGGGTGTCATGGTCTAGAGAACTCACAGATGAAGAAGCCAAGCCTTTTCTTTCTCTCTCTTTCATTGATGGTTCAGAATGGATCAAATTCTAA 1167 43.96 MSKLQKTFGISIINVHLVLILVLLLNPKRTQCHTKGLRPRKSIPKRPPEINTTQTQLAEQQFMKWVKFVGSLKHSRFKTAKNKVFPSYSLTVDKDPVVGDFMSIQDAIDSLPFINLVRVVIKVHAGVYTEKVTIPPLKSFISIEGAGADKTIVQWGDTAQTPGPKGQPMGTYSSATFAVNAPYFIAKNITFKNTTPLPAPGAQGKQAVAFRISADTAAFIGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQYMGALTAQRRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYRCTGEGASFAGRVSWSRELTDEEAKPFLSLSFIDGSEWIKF 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8367654 8369949 - Conep04aG0100000.1 Cone4ag0965 435943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0965 388 ProSitePatterns Pectinesterase signature 2. 245 254 IPR033131 -
Cone4ag0965 388 Gene3D - 86 388 IPR012334 -
Cone4ag0965 388 FunFam Pectinesterase 86 388 - -
Cone4ag0965 388 SUPERFAMILY Pectin lyase-like 86 387 IPR011050 -
Cone4ag0965 388 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 387 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cone4ag0965 388 Pfam Pectinesterase 98 382 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0384 Cone-Chr12:2206079 Cone4ag0965 Cone-Chr4:8367654 6.01E-108 dispersed
Cone4ag0104 Cone-Chr4:498331 Cone4ag0965 Cone-Chr4:8367654 8.97E-71 dispersed
Cone4ag0965 Cone-Chr4:8367654 Cone8ag0400 Cone-Chr8:2461221 7.97E-105 dispersed
Cone4ag0761 Cone-Chr4:4278843 Cone4ag0965 Cone-Chr4:8367654 2.70E-208 wgd
Cone4ag0965 Cone-Chr4:8367654 Cone7ag1167 Cone-Chr7:8690853 2.05E-273 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0965 K01051 - rcu:8265139 659.448