Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0974 ATGAAGATCGAGGAATTGGACGGTCCTGCTTCTGATCGTGACGAGTTTGTAGACGTCAGGCAGAATCATCAGATTGTGAAGGTTGATGCTAAGAGAGCTTTAGTCGGGGCGGGCGCTCGGATCCTGTTTTACCCAACCCTTTTGTATAATGTGCTTCGTAACAAGATGGAGCCTGAGTTCAGATGGTGGGATGAAGTCGATCAGTTTCTTCTGCTTGGTGCTGTGCCGTTTCCTAAAGACGTTCCTCGATTGAAGCAGCTAGGTGTTGGTGGAGTTATCACTCTCAATGAATCTTATGAAACGCTTGTTCCTTCTTCATTATATCATGAATATGGAATTGATCACTTGACAATTCCCACAAGGGATTATTGTTTTGCTCCTAAATCTGCTGATATAAGCCGAGCTGTAGACTTTATTCACAAAAATGCTTCTTGTGGTAGAACGACTTATGTTCACTGTAAAGCAGGGAGGGGAAGGAGCACCACCATTGTTCTCTGCTATTTGGTCAAGTATAAACACATGACTCCTGCTGCTGCCCTCGAATATGTGCGGTCTAGAAGACCTAGAGTGTTACTAGCTCCATCACAATGGGAAGCTGTTCAAGAATACAGCAAGCATCGGGCATCTACTGGAGGATCTCCCTCAGGAGATGCAGTTATGATCACAAAAGCGGATCTTGAAGGGTATTACGGGAATTGTAGTGACAATACTGGTATGGAACTCGCGGTTGTCCCAAAAGTGGCCAGGACTAAGCCCATGATAGCCCGGTTATCTTGCCTCTTTGCATCATTGAAAGTTAATGGTGGTAGCGGGGCAGTCTCTAGGCGTCTTCCTGTCCCAGAGGCCCGTGCTTGTTGA 858 46.15 MKIEELDGPASDRDEFVDVRQNHQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMEPEFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNESYETLVPSSLYHEYGIDHLTIPTRDYCFAPKSADISRAVDFIHKNASCGRTTYVHCKAGRGRSTTIVLCYLVKYKHMTPAAALEYVRSRRPRVLLAPSQWEAVQEYSKHRASTGGSPSGDAVMITKADLEGYYGNCSDNTGMELAVVPKVARTKPMIARLSCLFASLKVNGGSGAVSRRLPVPEARAC 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8426607 8428477 + Conep04aG0100900.1 Cone4ag0974 435952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0974 285 Gene3D Protein tyrosine phosphatase superfamily 62 210 IPR029021 -
Cone4ag0974 285 ProSitePatterns Tyrosine specific protein phosphatases active site. 151 161 IPR016130 GO:0016311(InterPro)
Cone4ag0974 285 CDD PTPMT1 62 206 IPR044596 GO:0004721(InterPro)
Cone4ag0974 285 SMART dsp_5 65 206 IPR020422 GO:0006470(InterPro)
Cone4ag0974 285 ProSiteProfiles Dual specificity protein phosphatase domain profile. 62 209 IPR020422 GO:0006470(InterPro)
Cone4ag0974 285 FunFam Dual specificity phosphatase domain protein 62 209 - -
Cone4ag0974 285 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 55 205 IPR029021 -
Cone4ag0974 285 Pfam Dual specificity phosphatase, catalytic domain 84 205 IPR000340 GO:0016311(InterPro)
Cone4ag0974 285 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 130 198 IPR000387 GO:0016311(InterPro)
Cone4ag0974 285 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0399 Cone-Chr12:2339405 Cone4ag0974 Cone-Chr4:8426607 1.08E-97 dispersed
Cone4ag0974 Cone-Chr4:8426607 Cone8ag0418 Cone-Chr8:2586147 3.68E-95 dispersed
Cone4ag0974 Cone-Chr4:8426607 Cone7ag1160 Cone-Chr7:8657221 5.69E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0974 - - - 0.0