Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1007 ATGAGGAAGAAGAGATTGGCTTCTGAGATAGAGTTTGATTCCGGCTCCGCCACCGCAGGTGGTGGGGATCATGCTAGGTTTTGCCGCCGGAGCTTCTCAACGGCCGCCGCCACCACCACCGTGCCTAATATTCAAAACCCTACGGCTATGATGGCAGCCGTTAATGTCATCCCCAACTACTCCACTTTACTACTACCCACCACTTCTTTTTCCACGTCAAGCCCTGACGCTATTCATTTAACCACTCCTCTTCCTCCTCCTCATCCTCCCATTGCAAATGACAGTAATACCCTTTCCTCCCTCCTTCTACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAACAACCTCACCCTCCCGTCTGCGGGTTCTCAGGTCTTCCTCTATTCCCCGCCGAAGCCGAAAGGGCTCGGATATTCCATCCTCCGATGAATCCAATCCCGCACCCGTATCAGAATCGGGCTAGTTTCAATCAGGAGGTCGGCATTGTGGGCCCGATAATCCCAAATACTACTGCTACTGCTAATACTTTCGGCATGGATGAAAACGCGGGCGGGCCTGCCTCGGCATCGATGACATGGATCGACAGCATTACTAAAGACCTTATCCAAAGCTCCTCATCCGGTGTTTCTATCCCTCAACTTATTCAAAATGTTCGGGAAATCATTTATCCTTGTAACCCCAATGTTGCCACCTTACTAGAGTACCGCCTCCGTTCCCTAATCCAACAACCCGATCCGATTAATAATTACCCGATGGATGATCCCATACGGAGACAACTGCCGCCACCACCACCACCACCGCAACCACAGTCCAATACTTCTACTCAAAGTACGATCCCGCCACCGGAACAGGAACAAGAACAAGAACAACAACGGCAACAACGGCAACAACAGCAAGAACAACAACAAAAATGTGCTTCACTTTCGGAGATTGCAATGAAGAAGGAAGAGATGAGGCAACAGAAGAGAGACGAGGAAGGGTTGCACCTTCTGACATTACTACTACAATGCGCGGAGGCGGTTTCGACCGATAATTACGAAGAAGCCAACAATATGTTGTTGGAGATTTCGGAACTGTCAACGCCTTTCGGGACATCGGCTCAAAGGGTGGCAGCTTATTTCTCAGAGGCAATGTCGGCCAGGCTAGTGAGTTCTTGTCTCGGGATATACGCCGCTTTCCCGACCAATCTAGTTCCGGCTCTTAGCACTATTAATCAAAAGATGGCGTCAGCTTTTCAAGTGTTTAATGGGATTAGTCCCTTGGTTAAGTTCTCCCATTTCACCTCAAACCAAGCCATACAGGAAGCCTTTGAGAGAGAGCAAAGGGTGCATATCATAGATCTAGACGTAATGCAAGGGTTACAATGGCCGGGTCTGTTTCATATATTGGCGTCTAGGCCCGGCGGGCCACCGTACGTGCGGTTGACCGGGCTAGGGACCTCTTTGGATGCCCTAGAGGCCACAGGGAAGCGACTCTCGGACTTTGCTGAGAAGTTAGGGCTTCCATTCGAGTTCTTTCCGGTCGCGGAAAAAGTCGGAAACTTGGATCCGGAAAGGTTGAATGTAGATAGCAAGAGGGAGGCCGTTGCCGTGCATTGGTTGCAACATTCCCTATACGATGTAACCGGTTCCGATTTAAATACCCTACAACTTTTGAAGAGGTTGTCACCGAAAGTGGTGACGGTGGTAGAGCAAGATCTGAGCCGTGGATCCTCCAACTTCTTGGGAAGGTTCGTGGAGGCAATACATTATTACTCGGCACTCTTCGACTCGCTAGGAGTTAGCTACGGAGAGGAAAGTCAAGAGAGACATGTAGTGGAACAACAGTTATTGTCAAGGGAGATAAAAAACGTGCTAGCCGTTGGGGGCGGAGGAGGAGGAGGCGGGCCCACGTCGAGGAAGTTCAACAAATATTGGAGGGAGAAGTTGAGGGAATCCGGGTTTAAGAGCGTGTCTTTGGCCGGAAATGCTGCTTCCCAGGCCACGCTTCTCTTGGGGATGTTTCCGTCCGATGGAGGGTATACTTTGGTGGAGGACAATGGGACCCTCAAGCTTGGATGGAAAGACCTTTGTTTACTCACAGCTTCTGCCTGGAGACCGTGGTGA 2112 50.38 MRKKRLASEIEFDSGSATAGGGDHARFCRRSFSTAAATTTVPNIQNPTAMMAAVNVIPNYSTLLLPTTSFSTSSPDAIHLTTPLPPPHPPIANDSNTLSSLLLQQQQQQQQQQQQQQPHPPVCGFSGLPLFPAEAERARIFHPPMNPIPHPYQNRASFNQEVGIVGPIIPNTTATANTFGMDENAGGPASASMTWIDSITKDLIQSSSSGVSIPQLIQNVREIIYPCNPNVATLLEYRLRSLIQQPDPINNYPMDDPIRRQLPPPPPPPQPQSNTSTQSTIPPPEQEQEQEQQRQQRQQQQEQQQKCASLSEIAMKKEEMRQQKRDEEGLHLLTLLLQCAEAVSTDNYEEANNMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAAFPTNLVPALSTINQKMASAFQVFNGISPLVKFSHFTSNQAIQEAFEREQRVHIIDLDVMQGLQWPGLFHILASRPGGPPYVRLTGLGTSLDALEATGKRLSDFAEKLGLPFEFFPVAEKVGNLDPERLNVDSKREAVAVHWLQHSLYDVTGSDLNTLQLLKRLSPKVVTVVEQDLSRGSSNFLGRFVEAIHYYSALFDSLGVSYGEESQERHVVEQQLLSREIKNVLAVGGGGGGGGPTSRKFNKYWREKLRESGFKSVSLAGNAASQATLLLGMFPSDGGYTLVEDNGTLKLGWKDLCLLTASAWRPW 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8713276 8716959 - Conep04aG0104200.1 Cone4ag1007 435985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1007 703 MobiDBLite consensus disorder prediction 247 308 - -
Cone4ag1007 703 MobiDBLite consensus disorder prediction 258 273 - -
Cone4ag1007 703 ProSiteProfiles GRAS family profile. 323 701 IPR005202 -
Cone4ag1007 703 MobiDBLite consensus disorder prediction 1 22 - -
Cone4ag1007 703 MobiDBLite consensus disorder prediction 74 128 - -
Cone4ag1007 703 Pfam GRAS domain family 333 701 IPR005202 -
Cone4ag1007 703 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 300 700 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009630(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0051457(PANTHER)|GO:0090610(PANTHER)
Cone4ag1007 703 MobiDBLite consensus disorder prediction 274 308 - -
Cone4ag1007 703 MobiDBLite consensus disorder prediction 93 121 - -
Cone4ag1007 703 Coils Coil 285 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0784 Cone-Chr20:5523915 Cone4ag1007 Cone-Chr4:8713276 2.16E-123 dispersed
Cone20ag1330 Cone-Chr20:8597688 Cone4ag1007 Cone-Chr4:8713276 1.42E-18 dispersed
Cone4ag1007 Cone-Chr4:8713276 Cone6ag0242 Cone-Chr6:1123729 1.30E-133 dispersed
Cone4ag1007 Cone-Chr4:8713276 Cone7ag1134 Cone-Chr7:8539060 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45969 PF00365 PFK 2.20E-65 CL0240 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1007 K27742 - ath:AT3G54220 664.455