Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1010 ATGATGCTCGGAGAACATCACCGGCTTAATCCGACGGTCCACGTACCACCGTGGACACATTCCAGCGATGATGAGCTAACGGCGGAGATGTTTTATTCGAACGGTGCCGGATTTGCAAACGGCAGCGGCGACTACTCTCCTGTCTCTCCCACTTATCATCATCATCTACACGAATCACTGACGGCTCTGCAACGTTATTTACCGTCAAACGACTCCGACCTGGACTCCGACCCCGAGCTATCGGGTCGAGAACCGGACGCTCCGATCGACGCGTACTCATGCGATCATTTCCGTATGTACGAGTTCAAAGTGAGGAAGTGCGCACGTGGGAGGTCACATGACTGGACCGAGTGCCCGTACGCCCACCCGGGCGAAAAAGCCCGTCGACGCGACCCGAGGAAGTACCACTATTCGGGCAGTTCCTGCCCAGATTTCCGTAAGGGAAACTGCATGAAGGGCGATGCTTGCGAGTTCGCTCATGGCGTGTTTGAGTCGTGGCTCCACCCGGCTCGATACCGGACTCAGCCATGCAAGGATGGAACAAGTTGTCGGCGCAGGGTTTGTTTCTTCGCCCACACGCCCGAGCAGCTCCGCATCTTGCCCCATTCGTACGACGGGGCGGGTTCGGGTTTGAAGCCGTTTTTAGCGTCCTCTCTTTCGGTATCACCGCCTATGAGCCCGTTAATCGAGTCTCCGCCCATGTCTCCATTGGGCCGGTTAAGTCTCGGATCGGGTACCGGTATGGGTGCAGGTTCGATCTCTGATATGGTGGCGTCGCTGAGGAATATACAGCTTGGAAAGGTGAAGTCTTTACCGGGTTCTCGGAATGTGCAATTGGGCGGGTCTTCACCCGTATTCGGATCTTCTCCAAGGGGGTCTTTGCTCCGACCCGGGTTCTACAGCCTGCCCACTACCCCTACTCAGGGTCCAAGCCGTAGTGGATATGGGTATCTGGACATGTGGGACCCGAGTATCGAAGAGGAGCCGGAAATGGAGCGGGTGGAGTCGGGGAGGGATCTTCGAGTGAAAATGTTCGAAAAAATCAAGATGGAAAGTTCAGTGATGGGTTCGGATCCTTCTGTGGGGACTCCGGATGTTGGGTGGGTTTCAGAGCTCTTGAAGTGA 1125 55.82 MMLGEHHRLNPTVHVPPWTHSSDDELTAEMFYSNGAGFANGSGDYSPVSPTYHHHLHESLTALQRYLPSNDSDLDSDPELSGREPDAPIDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGSSCPDFRKGNCMKGDACEFAHGVFESWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPHSYDGAGSGLKPFLASSLSVSPPMSPLIESPPMSPLGRLSLGSGTGMGAGSISDMVASLRNIQLGKVKSLPGSRNVQLGGSSPVFGSSPRGSLLRPGFYSLPTTPTQGPSRSGYGYLDMWDPSIEEEPEMERVESGRDLRVKMFEKIKMESSVMGSDPSVGTPDVGWVSELLK 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8792079 8793601 + Conep04aG0104500.1 Cone4ag1010 435988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1010 374 Gene3D - 136 199 - -
Cone4ag1010 374 FunFam Zinc finger CCCH domain-containing protein 66 94 162 - -
Cone4ag1010 374 ProSiteProfiles Zinc finger C3H1-type profile. 137 163 IPR000571 GO:0046872(InterPro)
Cone4ag1010 374 PANTHER UNKEMPT FAMILY MEMBER 12 374 IPR045234 -
Cone4ag1010 374 MobiDBLite consensus disorder prediction 68 87 - -
Cone4ag1010 374 SMART c3hfinal6 171 194 IPR000571 GO:0046872(InterPro)
Cone4ag1010 374 SMART c3hfinal6 136 162 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0910 Cone-Chr17:7172447 Cone4ag1010 Cone-Chr4:8792079 6.62E-107 dispersed
Cone4ag0778 Cone-Chr4:4585632 Cone4ag1010 Cone-Chr4:8792079 3.73E-144 dispersed
Cone4ag1010 Cone-Chr4:8792079 Cone7ag0724 Cone-Chr7:4337825 9.63E-129 dispersed
Cone1ag0567 Cone-Chr1:5761316 Cone4ag1010 Cone-Chr4:8792079 4.79E-56 wgd
Cone4ag1010 Cone-Chr4:8792079 Cone7ag1137 Cone-Chr7:8577193 7.95E-250 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45970 PF01198 Ribosomal_L31e 1.90E-41 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1010 - - - 0.0