Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1010 | ATGATGCTCGGAGAACATCACCGGCTTAATCCGACGGTCCACGTACCACCGTGGACACATTCCAGCGATGATGAGCTAACGGCGGAGATGTTTTATTCGAACGGTGCCGGATTTGCAAACGGCAGCGGCGACTACTCTCCTGTCTCTCCCACTTATCATCATCATCTACACGAATCACTGACGGCTCTGCAACGTTATTTACCGTCAAACGACTCCGACCTGGACTCCGACCCCGAGCTATCGGGTCGAGAACCGGACGCTCCGATCGACGCGTACTCATGCGATCATTTCCGTATGTACGAGTTCAAAGTGAGGAAGTGCGCACGTGGGAGGTCACATGACTGGACCGAGTGCCCGTACGCCCACCCGGGCGAAAAAGCCCGTCGACGCGACCCGAGGAAGTACCACTATTCGGGCAGTTCCTGCCCAGATTTCCGTAAGGGAAACTGCATGAAGGGCGATGCTTGCGAGTTCGCTCATGGCGTGTTTGAGTCGTGGCTCCACCCGGCTCGATACCGGACTCAGCCATGCAAGGATGGAACAAGTTGTCGGCGCAGGGTTTGTTTCTTCGCCCACACGCCCGAGCAGCTCCGCATCTTGCCCCATTCGTACGACGGGGCGGGTTCGGGTTTGAAGCCGTTTTTAGCGTCCTCTCTTTCGGTATCACCGCCTATGAGCCCGTTAATCGAGTCTCCGCCCATGTCTCCATTGGGCCGGTTAAGTCTCGGATCGGGTACCGGTATGGGTGCAGGTTCGATCTCTGATATGGTGGCGTCGCTGAGGAATATACAGCTTGGAAAGGTGAAGTCTTTACCGGGTTCTCGGAATGTGCAATTGGGCGGGTCTTCACCCGTATTCGGATCTTCTCCAAGGGGGTCTTTGCTCCGACCCGGGTTCTACAGCCTGCCCACTACCCCTACTCAGGGTCCAAGCCGTAGTGGATATGGGTATCTGGACATGTGGGACCCGAGTATCGAAGAGGAGCCGGAAATGGAGCGGGTGGAGTCGGGGAGGGATCTTCGAGTGAAAATGTTCGAAAAAATCAAGATGGAAAGTTCAGTGATGGGTTCGGATCCTTCTGTGGGGACTCCGGATGTTGGGTGGGTTTCAGAGCTCTTGAAGTGA | 1125 | 55.82 | MMLGEHHRLNPTVHVPPWTHSSDDELTAEMFYSNGAGFANGSGDYSPVSPTYHHHLHESLTALQRYLPSNDSDLDSDPELSGREPDAPIDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGSSCPDFRKGNCMKGDACEFAHGVFESWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPHSYDGAGSGLKPFLASSLSVSPPMSPLIESPPMSPLGRLSLGSGTGMGAGSISDMVASLRNIQLGKVKSLPGSRNVQLGGSSPVFGSSPRGSLLRPGFYSLPTTPTQGPSRSGYGYLDMWDPSIEEEPEMERVESGRDLRVKMFEKIKMESSVMGSDPSVGTPDVGWVSELLK | 374 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8792079 | 8793601 | + | Conep04aG0104500.1 | Cone4ag1010 | 435988 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1010 | 374 | Gene3D | - | 136 | 199 | - | - | |
Cone4ag1010 | 374 | FunFam | Zinc finger CCCH domain-containing protein 66 | 94 | 162 | - | - | |
Cone4ag1010 | 374 | ProSiteProfiles | Zinc finger C3H1-type profile. | 137 | 163 | IPR000571 | GO:0046872(InterPro) | |
Cone4ag1010 | 374 | PANTHER | UNKEMPT FAMILY MEMBER | 12 | 374 | IPR045234 | - | |
Cone4ag1010 | 374 | MobiDBLite | consensus disorder prediction | 68 | 87 | - | - | |
Cone4ag1010 | 374 | SMART | c3hfinal6 | 171 | 194 | IPR000571 | GO:0046872(InterPro) | |
Cone4ag1010 | 374 | SMART | c3hfinal6 | 136 | 162 | IPR000571 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag0910 | Cone-Chr17:7172447 | Cone4ag1010 | Cone-Chr4:8792079 | 6.62E-107 | dispersed | |
Cone4ag0778 | Cone-Chr4:4585632 | Cone4ag1010 | Cone-Chr4:8792079 | 3.73E-144 | dispersed | |
Cone4ag1010 | Cone-Chr4:8792079 | Cone7ag0724 | Cone-Chr7:4337825 | 9.63E-129 | dispersed | |
Cone1ag0567 | Cone-Chr1:5761316 | Cone4ag1010 | Cone-Chr4:8792079 | 4.79E-56 | wgd | |
Cone4ag1010 | Cone-Chr4:8792079 | Cone7ag1137 | Cone-Chr7:8577193 | 7.95E-250 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45970 | PF01198 | Ribosomal_L31e | 1.90E-41 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1010 | - | - | - | 0.0 |