Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1011 ATGGTGATAACACCGACAATTAACTTCATCCTCTTCTTCATGCTCCTCCTTTCATCTCATCTTTCAGTCCACGCTCAAATGAAAACAGGCTTCATAAGTATTGACTGTGGTTCCACAGTGGGATACTACAGCGATATAGACACAGGCATAAGTTATAACAGCGATTCGCCTTACATAGAAACCGGAATAAACCAAAACATCTCCTCATCATTCGCATATCCAAATAACCCGAATCTCCCCTTCCCTCTCTCTGACCTTAGAAGCTTCCCTCAAGGCACCAAAAACTGCTACTCATTACCACCTCAACTTGAAAATGGAAGCTCTATTTTAATCCGAGCCACCTTCATGTACGGTAACTATGATGGAAAAAACAAACTGCCTCAATTCGATCTTTTTCTAGATGTTAATTTCTGGTCAACTGTTAAATTCAGTAATGCTTCAGAAGTTGTTACTATAGAGATTATAAGCACGGCACGAGGAAATGATGTCTATGTTTGTCTCTTAAATAAAGGTCTAGGGACTCCTTTTATATCATCATTGGAATTAAGACCTCTTAATAGTTCTATTTACCGAGAAACCGAATCTGGGTCCGGTTCTTATTCTTCTTCTTCTTCACTAGTCCTGTTTGAAAGATTGAATATTGGATCAGACAATGTAGCAACGCGATATAACGATGATATTTTCGATCGGACTTGGTCATCTTACATGTCGCCTTTGTGGGACCCGGTTAATACGTCGTCTCTAATTGATACTACTCTAGATGGATATAAAGCACCCTTTGGAGTTATTAGTACGGCTGCTAAGCCGAAAAATGCAAATGGATCTCTTGAGTTGTACTGGAATGGTACAGATTCGGGTTTGGAGTTTAATGTTTATTTGTACTTTGCGGAGTTAGAGAAGCTTCCAAAAAACCAGACTAGGAAGTTTAATGTATCGTGGAACGGAGCTCCAATTTTAGGACCAATTATGCCTGTGTACTTATATTCAAACACGATGTCTAATCAGAAAGTATTGATGGGAAAAGAACATCGGATTTCGATCTACAAAACAGAGGATTCTACCCTCGCCCCAATTCTTAACGCAGCTGAGGTGTATATAGTTCGGAAAATGGAGGAACTACCAACATATAGAGAAGATGTTGATGCAATGTATGACATTAAATCAACATACCAAGTGAAGAAATTTTGGGCGGGAGATCCGTGCGGACCGAAGAATTACTCTTGGGAGGGTCTAGAATGCGATTATAGTAGTTCTGTTCCGAGGATTATATCCCTGAACCTAACATCAAGTAATTTGACGGGTATTATCATTGCTTCGATTGGAAAACTGTCATCGCTCAAGTCCTTGGATTTATCGAATAATAACTTCACAGGATCGTTTCCGGAGTTTCTAGGAGACCTAAAATCCTTAAATCTACTGAATTTGAAGGGTAACGAGTTGTCCAATTGTGTTCCTTCTACACTCAGAAAAAAATCTCAGACTGGAATAATCGAATTGAGTCTGGATGATCAAAATCTCTGTCGCTCGGGGAAAAAGAAGAATATAATCGTTCCAGTAGTTGCATCAGTTTCATCAATACTGGTATTAATTGCAGCATTGATTACAATATGGAGACTAAGAAATAAATCAGATAGTATAAAAGAAGGACGAGTAGCATCAAGGAAGTGCCGGTTTTCTTATGCCGAGATATTAACCATTACCAACAACTTCGAAACTATGATCGGGAAAGGAGGATTCGGGTCAGTTTTTCTTGGCCAAATGGAAGATGGGTCGACCCAAGTTGCAGTCAAGATGCTTTCTCCCTCTTCATCTCAAGGGTTCAAGGAATTCCAAACAGAGGCTGAGCTCTTAATGAGAATTCATCATAGGAACTTGGCCTATTTTGTTGGATACTGTGATGAAGGCGAGAATCTGGCTCTTATCTATGAGTACTTAGCAAATGGCAACTTAAAGGAAAATCTATCAGAGAGGAATTCACGTCCCTTGAGCTGGGAAATGAGACTCCGCATTGCTATTGACGCTGCTCAAGGATTGGAGTATCTACATCATGGATGTAAGCCACCTATAATCCATAGAGACGTCAAGTCTGCCAATATTCTCTTAAGTGAATTAGAAGCTAAAATAGCCGATTTCGGTCTCTCAAGAGCTTTCCCGGTAGACAATCAAGCAAATGCAGTAAGTGCTGTCATGGGCACAACCGGATACCTTGATCCCGAGTACTATGTTACTCAGAAATTTAGTGAAAAGAGTGATGTTTATAGCTTTGGAATCGTATTGTTAGAGCTAATCACGGGCCAACCTGCAATAATAAAAGGTGAAGCAACGATACATATACTGGAATGGATAAGCGTAGAGCTTAAAAATGGGGATGTAAATAGTGTTGTGGATAAACGTTTGCAAGGAGACTACGATAGGAATTCAGTTTGGAAATGCTTGGAGGTAGGGATGGCTTGCACGGCCCGCACTTCCATCTCGAGGGCAACTATGGAATTTGTGGTGGCGGAGCTAAAGGAGTGTTTGGCAATGGAGTTGTCAAGGGATGGAAAGGTTATAACTCCTATATCAGTGGATAAAATGGTGAGGAGTACGGATCCGAAGAATTATTTGAATAGTGCTGATCATTCCATGACGGGGCCTTCACCGAGATGA 2649 40.51 MVITPTINFILFFMLLLSSHLSVHAQMKTGFISIDCGSTVGYYSDIDTGISYNSDSPYIETGINQNISSSFAYPNNPNLPFPLSDLRSFPQGTKNCYSLPPQLENGSSILIRATFMYGNYDGKNKLPQFDLFLDVNFWSTVKFSNASEVVTIEIISTARGNDVYVCLLNKGLGTPFISSLELRPLNSSIYRETESGSGSYSSSSSLVLFERLNIGSDNVATRYNDDIFDRTWSSYMSPLWDPVNTSSLIDTTLDGYKAPFGVISTAAKPKNANGSLELYWNGTDSGLEFNVYLYFAELEKLPKNQTRKFNVSWNGAPILGPIMPVYLYSNTMSNQKVLMGKEHRISIYKTEDSTLAPILNAAEVYIVRKMEELPTYREDVDAMYDIKSTYQVKKFWAGDPCGPKNYSWEGLECDYSSSVPRIISLNLTSSNLTGIIIASIGKLSSLKSLDLSNNNFTGSFPEFLGDLKSLNLLNLKGNELSNCVPSTLRKKSQTGIIELSLDDQNLCRSGKKKNIIVPVVASVSSILVLIAALITIWRLRNKSDSIKEGRVASRKCRFSYAEILTITNNFETMIGKGGFGSVFLGQMEDGSTQVAVKMLSPSSSQGFKEFQTEAELLMRIHHRNLAYFVGYCDEGENLALIYEYLANGNLKENLSERNSRPLSWEMRLRIAIDAAQGLEYLHHGCKPPIIHRDVKSANILLSELEAKIADFGLSRAFPVDNQANAVSAVMGTTGYLDPEYYVTQKFSEKSDVYSFGIVLLELITGQPAIIKGEATIHILEWISVELKNGDVNSVVDKRLQGDYDRNSVWKCLEVGMACTARTSISRATMEFVVAELKECLAMELSRDGKVITPISVDKMVRSTDPKNYLNSADHSMTGPSPR 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8794506 8798751 - Conep04aG0104600.1 Cone4ag1011 435989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1011 882 Gene3D Phosphorylase Kinase; domain 1 556 644 - -
Cone4ag1011 882 ProSitePatterns Protein kinases ATP-binding region signature. 574 597 IPR017441 GO:0005524(InterPro)
Cone4ag1011 882 SUPERFAMILY L domain-like 405 507 - -
Cone4ag1011 882 Pfam Malectin-like domain 34 366 IPR024788 -
Cone4ag1011 882 FunFam Leucine-rich repeat receptor-like kinase 378 506 - -
Cone4ag1011 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1011 882 SUPERFAMILY Protein kinase-like (PK-like) 556 859 IPR011009 -
Cone4ag1011 882 ProSiteProfiles Protein kinase domain profile. 568 832 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1011 882 Pfam Protein tyrosine and serine/threonine kinase 570 834 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1011 882 SMART serkin_6 568 810 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1011 882 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 645 848 - -
Cone4ag1011 882 FunFam receptor-like protein kinase FERONIA 537 644 - -
Cone4ag1011 882 CDD STKc_IRAK 574 838 - -
Cone4ag1011 882 Gene3D Transferase(Phosphotransferase) domain 1 645 852 - -
Cone4ag1011 882 Gene3D Ribonuclease Inhibitor 379 499 IPR032675 -
Cone4ag1011 882 Pfam Leucine rich repeat 424 480 IPR001611 GO:0005515(InterPro)
Cone4ag1011 882 PANTHER OS07G0107800 PROTEIN-RELATED 26 842 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0940 Cone-Chr4:7847132 Cone4ag1011 Cone-Chr4:8794506 3.73E-197 dispersed
Cone4ag1011 Cone-Chr4:8794506 Cone9ag0289 Cone-Chr9:1245040 6.43E-223 dispersed
Cone17ag0124 Cone-Chr17:648174 Cone4ag1011 Cone-Chr4:8794506 3.51E-97 wgd
Cone20ag1283 Cone-Chr20:8370029 Cone4ag1011 Cone-Chr4:8794506 2.26E-197 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82768 PF01198 Ribosomal_L31e 1.90E-41 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1011 - - - 0.0