Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1048 ATGGATGACGCTTTCGAGATGAACGGCTATCATCAATTCGAGTTCAATCCATCCCATAATTCAAATGGGTTCATCAAAGTAAATCCTGAATTAGGAGACCCAAGTTTTCGTCTTCAACCTAATTTAACCCCTGTTGATAGTTCAAGTTCATCTTCAACCTCAAGGTTCTCAGAAGCTGAATCTCCAGACGCACCACCTGACACCTCAAACACTCTTCTCAAGTTCATAAGCCAGATGCTTATGGACGAAGAGGACTTAGAATATGATCCCTGTATGTATGAGAATTGTTTAGCTCTCCATGCTGCTGAGAAACCCTTCTATGATGTGCTCAATCAGAAGTACCCATTACTCTGCCCACCCTCTGTTCGACCAAATGCCCAGAACCCAGATGTTGAAAATTTTCATGGAAAAGCTTCTTTTTTTGACCCGTCGTTAGAAAACCTTCTTTCTTCATATTCTACTTTTGATATTCCATCAATTGAGTTTTCTGGCAAGGGAGTGGAGGAAGCAGCAAGCAAACTTTCTGGTAATGGCCAATTTGAAATCATTGATTCGGAGACAAACAACTCGCTGAATGGGTCACCACATGATTCATCAAGGGGAAAGAAGAGTCACCAGAGAGAAGAAGACAGCGATGATTCTCAAGAAGGTAGAAACAACAAGCAATCAGAAACAACTTACTCAGATGATTATGAATCCGAAAATGAATTTGACAAAGTGTTACTCTACCAAGGCTCAAATTGTAGTGCCAATGTATCATCCGGAAATGTGAAAACCAAGAAAACCCAGCTTAAACAGCAGTCAAAACGGTCAAACAGCAAGTCAAATCGGTCAAACAGCAAGTCAAATCGGTCAAAGAAACGTGGAAACGACAAGGAGCTGGTCGACTTGTGGACCCTACTAACTCAAAGTGCACAAGCCGTTGCAAGCTATGACCAAAGAAATGCAAAAGAACTACTCAACCAAATCAGAAAACACTCTTCACCCTACGGAGATGGGACCCAGAGGCTAGCCCATTACTTCGCAAAGGGCCTTGAAGCCAGGCTCTATGCCGGGTCACCATTATATATGCCTCTTGCAGGTAAAGAAAGTTCTTCAGCTGAAATATTAAGAGCTTACAAGGTGTTTATAACAGCCTGCCCTTTCAAGAGGATGGCGAATTTCATGGCCAACAGAACAATCCTGAGTCTAGCCAAGAAAACAAGACAACTTCACATCATAGATTTTGGTATTCTATACGGTTATCAATGGCCCTGCCTTATCCAACACCTATCTTATCTACCCGGTGGGCCCCCCAAGCTCCGAATCACCGGAATCGAGCTTCCCCAACCAGGTTTCCGGCCGGCAGAAGGTGTGGAAAAGACTCGCCGGAGATTAGAAAGTTATTGCAAGAGATTCCAGATTCCGTTCGAGTGCATTGTCATTGCACAGAAATGGGAAACAGTTCGGATTGAGGATCTTAAACTTGAAAGGGATGAAGTGGTAGTTGTCAACTGTCTAGGGCGGTTGAAAAACATACCGGATGAGACAGTTGTAGCGGATAGTCCTAGGGATAAAGTCCTAAAATTGATCAAGAAGATAAAACCAGACTTGTTTGTTCACGGGGTTGTTAATGGAACATATAATGCTCCATTTTTTGATTCGAGGTTTAGGGAGGCATTGTTTCATTACTCTGCATTTTTCGACTTGTTAGAGGCTACTGTGCCTTTGGAAGATCAAGACAGGTTGACTTTTGAGAGACAGGTTATAGGAAGAGATATTATAAATGTGATAGCTTGTGAGGGCTTGGCTAGGGTTGAGAGGCCGGAAACTTACAAGCAATGGCAGATTAGGAATCAAAGGGCCGGGTTCAGGCAGATTGGGTTGGATCGTGAGCTCTTGGACGAAGTGAGGGGGATGGTGAGAGATGAATACCATGCGGATTTTGTTGTGGATGAGGATAAGTATTGGATGTTACAAGGTTGGAAGGGGAGGATTATTTGTGCTTTATCTTGTTGGGTGCCTGCCTAG 2010 43.33 MDDAFEMNGYHQFEFNPSHNSNGFIKVNPELGDPSFRLQPNLTPVDSSSSSSTSRFSEAESPDAPPDTSNTLLKFISQMLMDEEDLEYDPCMYENCLALHAAEKPFYDVLNQKYPLLCPPSVRPNAQNPDVENFHGKASFFDPSLENLLSSYSTFDIPSIEFSGKGVEEAASKLSGNGQFEIIDSETNNSLNGSPHDSSRGKKSHQREEDSDDSQEGRNNKQSETTYSDDYESENEFDKVLLYQGSNCSANVSSGNVKTKKTQLKQQSKRSNSKSNRSNSKSNRSKKRGNDKELVDLWTLLTQSAQAVASYDQRNAKELLNQIRKHSSPYGDGTQRLAHYFAKGLEARLYAGSPLYMPLAGKESSSAEILRAYKVFITACPFKRMANFMANRTILSLAKKTRQLHIIDFGILYGYQWPCLIQHLSYLPGGPPKLRITGIELPQPGFRPAEGVEKTRRRLESYCKRFQIPFECIVIAQKWETVRIEDLKLERDEVVVVNCLGRLKNIPDETVVADSPRDKVLKLIKKIKPDLFVHGVVNGTYNAPFFDSRFREALFHYSAFFDLLEATVPLEDQDRLTFERQVIGRDIINVIACEGLARVERPETYKQWQIRNQRAGFRQIGLDRELLDEVRGMVRDEYHADFVVDEDKYWMLQGWKGRIICALSCWVPA 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9129371 9131380 - Conep04aG0108600.1 Cone4ag1048 436026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1048 669 ProSiteProfiles GRAS family profile. 288 667 IPR005202 -
Cone4ag1048 669 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 256 666 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone4ag1048 669 MobiDBLite consensus disorder prediction 251 290 - -
Cone4ag1048 669 Pfam GRAS domain family 299 666 IPR005202 -
Cone4ag1048 669 MobiDBLite consensus disorder prediction 40 69 - -
Cone4ag1048 669 MobiDBLite consensus disorder prediction 198 233 - -
Cone4ag1048 669 MobiDBLite consensus disorder prediction 251 279 - -
Cone4ag1048 669 MobiDBLite consensus disorder prediction 35 69 - -
Cone4ag1048 669 MobiDBLite consensus disorder prediction 185 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0347 Cone-Chr3:1765685 Cone4ag1048 Cone-Chr4:9129371 5.79E-64 dispersed
Cone4ag1048 Cone-Chr4:9129371 Cone5ag1135 Cone-Chr5:5091380 3.91E-166 dispersed
Cone4ag1048 Cone-Chr4:9129371 Cone4ag1049 Cone-Chr4:9144152 3.17E-133 tandem
Cone1ag0629 Cone-Chr1:6095291 Cone4ag1048 Cone-Chr4:9129371 4.25E-194 wgd
Cone1ag1271 Cone-Chr1:56198858 Cone4ag1048 Cone-Chr4:9129371 4.39E-163 wgd
Cone4ag1048 Cone-Chr4:9129371 Cone5ag1134 Cone-Chr5:5088153 1.22E-153 wgd
Cone4ag1048 Cone-Chr4:9129371 Cone5ag0258 Cone-Chr5:1097559 1.70E-165 wgd
Cone4ag1048 Cone-Chr4:9129371 Cone7ag1079 Cone-Chr7:8200464 3.63E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45971 PF12165 Alfin 2.20E-67 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1048 K27753 - csv:101217374 676.011