Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1056 ATGGCAAAAATACTGAGTTTAGTATCATGTCTCATGATCTCAACAATGTGGATGGCCGCAGAAGCTAGAATCCCCGGCGTATACAGCAGCGGCCAATGGCAAACCGCTCACGCCACCTTCTACGGCGGCTCTGACGCCTCTGGCACTATGGGCGGAGCTTGCGGATACGGAAACTTGTACAGCCAGGGGTACGGCGTGAATACCGCGGCGCTAAGCACGGCTCTATTCAACAGCGGGCTGAGCTGTGGTGCTTGCTTTGAGATCAAGTGCGCAAACGACCGAAGATGGTGCCATTCCGGAAGTCCTTCCATTTTAATCACTGCCACCAACTTTTGCCCGCCTAACTTCGCTCTGCCCAACGATAACGGCGGCTGGTGCAACCCCCCTCGCCCCCATTTCGACCTCGCCATGCCCATGTTCCTTCAGATCGCCGAGTACCGCGCCGGAATTGTTCCCGTCTCCTACCGCCGAGTGGCATGCCGAAAGCGGGGAGGGATAAGGTTCACGATAAACGGGCACATGTACTTTAACTTGGTATTAATCTCCAACGTGGCGGGTGCAGGGGATATCGTGAGGGCTAGCGTGAAAGGATCGAAGACAGGGTGGATGAGCATGAGCCGGAACTGGGGTCAAAACTGGCAGTCAAACGCTATTTTGGTGGGCCAGACCTTGTCTTTTAGAGTTACGAGCAGTGACAGACGTACCTCTACGTCTTGGAACATTGTTCCCGCCAGCTGGCAGTTCGGTCAAACATTCACCGGCAAAAATTTCAGAGTTTAA 780 54.23 MAKILSLVSCLMISTMWMAAEARIPGVYSSGQWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDRRWCHSGSPSILITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLQIAEYRAGIVPVSYRRVACRKRGGIRFTINGHMYFNLVLISNVAGAGDIVRASVKGSKTGWMSMSRNWGQNWQSNAILVGQTLSFRVTSSDRRTSTSWNIVPASWQFGQTFTGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9198068 9199297 + Conep04aG0109400.1 Cone4ag1056 436034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1056 259 FunFam Expansin 22 161 - -
Cone4ag1056 259 FunFam Expansin 165 257 - -
Cone4ag1056 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Cone4ag1056 259 Gene3D - 165 257 IPR036749 -
Cone4ag1056 259 CDD DPBB_EXPA_N 32 160 - -
Cone4ag1056 259 Gene3D - 19 161 IPR036908 -
Cone4ag1056 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
Cone4ag1056 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
Cone4ag1056 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664(InterPro)
Cone4ag1056 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
Cone4ag1056 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
Cone4ag1056 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Cone4ag1056 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Cone4ag1056 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Cone4ag1056 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Cone4ag1056 259 PANTHER EXPANSIN-A15 15 257 IPR002963 GO:0009664(InterPro)
Cone4ag1056 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Cone4ag1056 259 SMART dpbb_1 68 155 IPR007112 -
Cone4ag1056 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Cone4ag1056 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Cone4ag1056 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
Cone4ag1056 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Cone4ag1056 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
Cone4ag1056 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Cone4ag1056 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Cone4ag1056 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Cone4ag1056 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Cone4ag1056 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1137 Cone-Chr11:8754627 Cone4ag1056 Cone-Chr4:9198068 1.93E-167 dispersed
Cone18ag0444 Cone-Chr18:2169890 Cone4ag1056 Cone-Chr4:9198068 3.62E-168 dispersed
Cone3ag0344 Cone-Chr3:1750135 Cone4ag1056 Cone-Chr4:9198068 1.95E-144 dispersed
Cone4ag1056 Cone-Chr4:9198068 Cone5ag0142 Cone-Chr5:611803 2.03E-131 dispersed
Cone1ag0635 Cone-Chr1:6129085 Cone4ag1056 Cone-Chr4:9198068 1.80E-170 wgd
Cone1ag1273 Cone-Chr1:56207894 Cone4ag1056 Cone-Chr4:9198068 1.66E-154 wgd
Cone4ag1056 Cone-Chr4:9198068 Cone5ag1140 Cone-Chr5:5119294 4.23E-169 wgd
Cone4ag1056 Cone-Chr4:9198068 Cone5ag0260 Cone-Chr5:1106128 5.32E-151 wgd
Cone4ag1056 Cone-Chr4:9198068 Cone7ag1075 Cone-Chr7:8181630 1.58E-187 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1056 - - - 0.0