Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1085 ATGTCCCCCGTCCACTTCCCACAACTCAGCCACAAAAAGAAAAATTATATCCACCCTCTTCCTCACAATCTCCGATCACACACACAACCACCTGAAAAGATGGCCTCCAAAACGGAACAAGACAACCTCGTATTCCGATCAAAGCTTCCTGACATCTACATCCCAAACCACCTCCCTCTTCATTCATATTGCTTCGAGAACATGTCGAAGATCGGGTCCCGCCCGTGCCTGATAAACGGCGCGACGGGCGACATATACACATACTACGACGTAGACCTAACCGCTCGGAAAGTCGGTTCGGGCCTCAACAAGCTCGGCATTGGCCCAGGCGACGTGATCATGCTCTTACTACCCAATTCGCCTCAATTCGTCTTCGCTTTCCTCGGAGCATCATATGTCGGGGCCATCATGACGGCGGCCAACCCATTCTTCACGGAAGCGGAGGTGGAAAAGCAAGCAAAAGCATCCAAAGCTAAACTCATAATAACTCAAGCATGTCATTATGACAAAGTAAAAGCCTTGGCACAAAATGATCATGACCATAAGGTTACGATCATGTCTATAGACACAACCCCAAATGAAGACTGTTTACATTTCTCCGTGCTAACTTCATCCAATGAGGAGGAGATTCCACAAGTCAAAATTGACCCAAACGATGTCGTGGCACTACCTTATTCGTCAGGCACAACGGGGCTACCAAAAGGAGTCATGCTAACGCACAAAGGGCTCGTGACAAGTGTCGCGCAACAAGTGGACGGAGACAATCCGAACTTGTACTATCACAACGAGGATGTGATTCTATGCGTGTTGCCACTTTTCCATATCTACTCACTCAACTCGGTGCTGCTCTGTGGGTTGAGATCAGGTGCGGCGATTCTATTGATGCAGAAGTTTGACATCGGTTCCTTGTTGGCGTTGACCGTTAGGTACAAGATTTCGATCTTTCCGATCGTTCCTCCAATCGTGTTGGCGATCTCGAAATCGCCTGATCTTGACAAGTATGATCTGAGTTCTATACGTGTGATTAAATGTGGAGGAGCTCCCCTTGGTAAGGAGTTGGAGGATTCTGTGAGAGCTAAGTTCCCTAATGCTGTTCTTGGCCAGGGATATGGAATGACAGAGGCAGGTCCAGTATTGACAATGGGATTAGCATTCGCTAAGCAACCGTTTTCGGTAAAGCCGGGGGCATGTGGCACTGTCGTCAGAAATGCCGAGATGAAGATTGTCGACACGGAAACCGGTGCCTCTCTGCCTCGCAACATGCCAGGAGAAATTTGCATTAGAGGAGATCAGATCATGAAAGGCTATTTGAACAATCCTGAGGCCACAAGGGATACCATAGACAAAGACGGGTGGCTACATACTGGCGATATCGGGTTGATTGATGACGACGATGAGCTCTTTATTGTGGACAGGTTGAAGGAACTGATCAAATATAAAGGGTTTCAAGTTGCTCCTGCTGAGCTTGAAGCCCTTCTTCTCACTCACCCTAACATATCCGATGCTGCCGTTGTTCCCATGAAAGATGAACAGGCTGGAGAGGTTCCTGTTGCGTTTGTAGTCACTTCCAACGGTTCTAACGTAACTGAGGATGACGTGAAACAGTTTGTATCCAAACAGGTGGTTTTCTACAAAAGAATAAACCGAGTGTTTTTTATCAATGCAATTCCCAAGTCACCATCAGGCAAGATCTTGAGGAAGGAATTAAGAGCGAAACTAGCTGCTGAATTTCCAAACTAA 1740 47.18 MSPVHFPQLSHKKKNYIHPLPHNLRSHTQPPEKMASKTEQDNLVFRSKLPDIYIPNHLPLHSYCFENMSKIGSRPCLINGATGDIYTYYDVDLTARKVGSGLNKLGIGPGDVIMLLLPNSPQFVFAFLGASYVGAIMTAANPFFTEAEVEKQAKASKAKLIITQACHYDKVKALAQNDHDHKVTIMSIDTTPNEDCLHFSVLTSSNEEEIPQVKIDPNDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGDNPNLYYHNEDVILCVLPLFHIYSLNSVLLCGLRSGAAILLMQKFDIGSLLALTVRYKISIFPIVPPIVLAISKSPDLDKYDLSSIRVIKCGGAPLGKELEDSVRAKFPNAVLGQGYGMTEAGPVLTMGLAFAKQPFSVKPGACGTVVRNAEMKIVDTETGASLPRNMPGEICIRGDQIMKGYLNNPEATRDTIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPNISDAAVVPMKDEQAGEVPVAFVVTSNGSNVTEDDVKQFVSKQVVFYKRINRVFFINAIPKSPSGKILRKELRAKLAAEFPN 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9393443 9396804 - Conep04aG0112400.1 Cone4ag1085 436063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1085 579 CDD 4CL 54 569 - -
Cone4ag1085 579 ProSitePatterns Putative AMP-binding domain signature. 223 234 IPR020845 -
Cone4ag1085 579 MobiDBLite consensus disorder prediction 17 38 - -
Cone4ag1085 579 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 39 570 - GO:0016405(PANTHER)
Cone4ag1085 579 SUPERFAMILY Acetyl-CoA synthetase-like 42 575 - -
Cone4ag1085 579 Pfam AMP-binding enzyme C-terminal domain 488 563 IPR025110 -
Cone4ag1085 579 Gene3D - 34 473 IPR042099 -
Cone4ag1085 579 FunFam 4-coumarate--CoA ligase 2 475 576 - -
Cone4ag1085 579 Pfam AMP-binding enzyme 70 437 IPR000873 -
Cone4ag1085 579 Gene3D - 474 576 IPR045851 -
Cone4ag1085 579 FunFam Long-chain-fatty-acid--CoA ligase FadD 46 474 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0376 Cone-Chr13:3435191 Cone4ag1085 Cone-Chr4:9393443 9.99E-127 dispersed
Cone19ag0408 Cone-Chr19:3414832 Cone4ag1085 Cone-Chr4:9393443 7.56E-31 dispersed
Cone1ag0891 Cone-Chr1:54515305 Cone4ag1085 Cone-Chr4:9393443 4.46E-246 dispersed
Cone4ag1085 Cone-Chr4:9393443 Cone5ag0595 Cone-Chr5:2547552 2.90E-243 dispersed
Cone1ag0303 Cone-Chr1:2270170 Cone4ag1085 Cone-Chr4:9393443 1.80E-36 transposed
Cone4ag1085 Cone-Chr4:9393443 Cone7ag1043 Cone-Chr7:8019733 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1085 K01904 - mdm:103427406 857.44