Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1113 | ATGGAAGAGGTAGAAGAAGCTAACAGAGCGGCTGTGCAAAGCTTCCATAGAGTTCTAAGCCTATTAACTCAGCCTCAGGATCAAGTTCAGTACAGGAATTTAATGGCAGAAACAGGGGAAACTGTTTTTAGATTCAGAAAAGTGATTTCTCTTCTAAACACTGGTTTGGGTCACGCAAGAGTCAGAAAGCTCAAGAAACTCCAAGTCCCTTTTCCCCAAAGCATCCTCTTAGACAACCCGAATTGCAAAACCGAGCCTCCAACCCACGAAAATAACCTTCAACTTTTCTTGGGTAAAAACCCATCTTTAGAATTAGTCTCAAATGGTAAGAACCCTCTCCAATTTTCCCAACAACAACAAGCCCTTTCTCCTCACTATCACTTCCTTCAACAGCAGCAGCAACAGCAGCAACAACAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAGGTTGTTTCTTCAGCATCAGCAAATGAAACAACAACAACAAGCCGAAATGCTGCTAAGTAGGAGTAATAATAGTGGTGTAAGTCTGAATTTTGATACCTCTAGTTGCACCCCTGCATTGTCATCTACTACTAGATCATTTATCTCTTCGTTGAGCATGGATGGGAGTGTGGCTAATTTGGATGGTAGCAGTGGATTCCATTTTGGGGCACCATCTCGTTCTTCAGATCATGATTCGCAGCATAAGAGAAAGTTCTTAGGGAAAGAGATTGAAGGGAGTGTTAAATGTGGAAGTAGCGGTAAATGCCATTGTTCAAAGAAGAGAAAACATAGAGTGAAAAGATCGATCAAAGTACCGGCTATAAGTAACAAGCTCGCAGACATTCCTCCAGATGATTATTCATGGAGAAAATATGGGCAGAAGCCGATAAAGGGTTCTCCCCATCCTAGGGGATACTACAAGTGTAGTAGCTTGAGAGGTTGCCCAGCAAGGAAGCATGTGGAGAGGTGCTTGGACGAGCCATCAATGCTTATCGTAACCTATGAAGGCGAGCACAACCACCCAAGGATACCCTCTCAATCTGCAAACACATAG | 1098 | 42.44 | MEEVEEANRAAVQSFHRVLSLLTQPQDQVQYRNLMAETGETVFRFRKVISLLNTGLGHARVRKLKKLQVPFPQSILLDNPNCKTEPPTHENNLQLFLGKNPSLELVSNGKNPLQFSQQQQALSPHYHFLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRLFLQHQQMKQQQQAEMLLSRSNNSGVSLNFDTSSCTPALSSTTRSFISSLSMDGSVANLDGSSGFHFGAPSRSSDHDSQHKRKFLGKEIEGSVKCGSSGKCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERCLDEPSMLIVTYEGEHNHPRIPSQSANT | 365 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 9616935 | 9619170 | + | Conep04aG0115800.1 | Cone4ag1113 | 436091 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1113 | 365 | Coils | Coil | 126 | 169 | - | - | |
Cone4ag1113 | 365 | SMART | WRKY_cls | 297 | 357 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone4ag1113 | 365 | FunFam | WRKY transcription factor 65 | 281 | 358 | - | - | |
Cone4ag1113 | 365 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 114 | 184 | - | - | |
Cone4ag1113 | 365 | Pfam | WRKY DNA -binding domain | 299 | 356 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone4ag1113 | 365 | Gene3D | WRKY domain | 286 | 358 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone4ag1113 | 365 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 1 | 361 | IPR044810 | GO:0003700(InterPro) | |
Cone4ag1113 | 365 | Pfam | Plant zinc cluster domain | 257 | 295 | IPR018872 | - | |
Cone4ag1113 | 365 | SUPERFAMILY | WRKY DNA-binding domain | 295 | 357 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone4ag1113 | 365 | ProSiteProfiles | WRKY domain profile. | 292 | 358 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone20ag0815 | Cone-Chr20:5790000 | Cone4ag1113 | Cone-Chr4:9616935 | 2.31E-122 | dispersed | |
Cone4ag1113 | Cone-Chr4:9616935 | Cone9ag1341 | Cone-Chr9:10068119 | 8.31E-54 | dispersed | |
Cone17ag0596 | Cone-Chr17:3167378 | Cone4ag1113 | Cone-Chr4:9616935 | 4.64E-117 | wgd | |
Cone17ag0272 | Cone-Chr17:1288799 | Cone4ag1113 | Cone-Chr4:9616935 | 1.24E-16 | wgd | |
Cone20ag1141 | Cone-Chr20:7768393 | Cone4ag1113 | Cone-Chr4:9616935 | 3.64E-16 | wgd | |
Cone4ag1113 | Cone-Chr4:9616935 | Cone7ag1018 | Cone-Chr7:7867537 | 6.90E-184 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45978 | PF10173 | Mit_KHE1 | 5.10E-35 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1113 | - | - | - | 0.0 |