Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1113 ATGGAAGAGGTAGAAGAAGCTAACAGAGCGGCTGTGCAAAGCTTCCATAGAGTTCTAAGCCTATTAACTCAGCCTCAGGATCAAGTTCAGTACAGGAATTTAATGGCAGAAACAGGGGAAACTGTTTTTAGATTCAGAAAAGTGATTTCTCTTCTAAACACTGGTTTGGGTCACGCAAGAGTCAGAAAGCTCAAGAAACTCCAAGTCCCTTTTCCCCAAAGCATCCTCTTAGACAACCCGAATTGCAAAACCGAGCCTCCAACCCACGAAAATAACCTTCAACTTTTCTTGGGTAAAAACCCATCTTTAGAATTAGTCTCAAATGGTAAGAACCCTCTCCAATTTTCCCAACAACAACAAGCCCTTTCTCCTCACTATCACTTCCTTCAACAGCAGCAGCAACAGCAGCAACAACAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAGGTTGTTTCTTCAGCATCAGCAAATGAAACAACAACAACAAGCCGAAATGCTGCTAAGTAGGAGTAATAATAGTGGTGTAAGTCTGAATTTTGATACCTCTAGTTGCACCCCTGCATTGTCATCTACTACTAGATCATTTATCTCTTCGTTGAGCATGGATGGGAGTGTGGCTAATTTGGATGGTAGCAGTGGATTCCATTTTGGGGCACCATCTCGTTCTTCAGATCATGATTCGCAGCATAAGAGAAAGTTCTTAGGGAAAGAGATTGAAGGGAGTGTTAAATGTGGAAGTAGCGGTAAATGCCATTGTTCAAAGAAGAGAAAACATAGAGTGAAAAGATCGATCAAAGTACCGGCTATAAGTAACAAGCTCGCAGACATTCCTCCAGATGATTATTCATGGAGAAAATATGGGCAGAAGCCGATAAAGGGTTCTCCCCATCCTAGGGGATACTACAAGTGTAGTAGCTTGAGAGGTTGCCCAGCAAGGAAGCATGTGGAGAGGTGCTTGGACGAGCCATCAATGCTTATCGTAACCTATGAAGGCGAGCACAACCACCCAAGGATACCCTCTCAATCTGCAAACACATAG 1098 42.44 MEEVEEANRAAVQSFHRVLSLLTQPQDQVQYRNLMAETGETVFRFRKVISLLNTGLGHARVRKLKKLQVPFPQSILLDNPNCKTEPPTHENNLQLFLGKNPSLELVSNGKNPLQFSQQQQALSPHYHFLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRLFLQHQQMKQQQQAEMLLSRSNNSGVSLNFDTSSCTPALSSTTRSFISSLSMDGSVANLDGSSGFHFGAPSRSSDHDSQHKRKFLGKEIEGSVKCGSSGKCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERCLDEPSMLIVTYEGEHNHPRIPSQSANT 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9616935 9619170 + Conep04aG0115800.1 Cone4ag1113 436091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1113 365 Coils Coil 126 169 - -
Cone4ag1113 365 SMART WRKY_cls 297 357 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag1113 365 FunFam WRKY transcription factor 65 281 358 - -
Cone4ag1113 365 SUPERFAMILY beta-sandwich domain of Sec23/24 114 184 - -
Cone4ag1113 365 Pfam WRKY DNA -binding domain 299 356 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag1113 365 Gene3D WRKY domain 286 358 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag1113 365 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 361 IPR044810 GO:0003700(InterPro)
Cone4ag1113 365 Pfam Plant zinc cluster domain 257 295 IPR018872 -
Cone4ag1113 365 SUPERFAMILY WRKY DNA-binding domain 295 357 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag1113 365 ProSiteProfiles WRKY domain profile. 292 358 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0815 Cone-Chr20:5790000 Cone4ag1113 Cone-Chr4:9616935 2.31E-122 dispersed
Cone4ag1113 Cone-Chr4:9616935 Cone9ag1341 Cone-Chr9:10068119 8.31E-54 dispersed
Cone17ag0596 Cone-Chr17:3167378 Cone4ag1113 Cone-Chr4:9616935 4.64E-117 wgd
Cone17ag0272 Cone-Chr17:1288799 Cone4ag1113 Cone-Chr4:9616935 1.24E-16 wgd
Cone20ag1141 Cone-Chr20:7768393 Cone4ag1113 Cone-Chr4:9616935 3.64E-16 wgd
Cone4ag1113 Cone-Chr4:9616935 Cone7ag1018 Cone-Chr7:7867537 6.90E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45978 PF10173 Mit_KHE1 5.10E-35 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1113 - - - 0.0