Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1118 ATGGGTGAGAAATTTTGGGAGAATGAAGAAGACAAGACCATGGTTGAATCCATAGTAGGTACAGAAGCGAGCCAGTTCCTGATTTCATTGGCTTCTAGAGATTTCTTATCCGAGATTGTTACACCACCACCCCCTGCTGGTGATTTGGGTGTGCAAAGAGGGCTTTATGAACTCGTTCATGGGTCTAATTGGAATTACGCAATTTTTTGGCGGGCTGTGGGCTTGAAATCCGGTTCCTCGACCTTGATTTGGGCCGATGGACACTGCTCTGATCCTAAGAGCGATGGTGTTGGCCAGTTTGGAGAAGATGAGAAGAACAGGGAGGTTAAAAGGCAGGTGCTCCGAAAGCTTCAGACAAGTTTCGGAAGGTTTAGCGAAACTAATTACTTGCCAAAACCAGACGATTTTTTTTCGGATTTGGAGATGTTCTACCTTACATCTATGTATTTTGCATTTCCATGTGATTCCGCAAGTGGGCCACCTGGGGAATTGTACAAGTCTGGCAAATCCATTTGGGCCTCAGAAATTGGCACTTGCTTACACAATTACCCATCAAGAGCATTGCTAGCAAGATCGGTTGGGTTCCAAACTGCAGTTTTTGTACCTGTGAAATCTGGAGTTGTTGAGCTAGGTTCAGTGAAATCAATCCCAGAAGAACAGAATGTTCTTGAAATGGTCAAAACCATGTTTGGAGATCATTCTAGTTCCTTACAATCAAAGGCTGTCCCAAAAATCTTCGGGCGGGAACTAAGTCTAGGTTCTAAATCCCTTAGTATCAACTTCTCCCCTAAGGTTGAAGATGATACGGTCTTCACTTCAGATGCTTATGAAATTCAGGCATTGGGTACTAATAATATTTACAGGAATTCTTCTAACGGGTCTCCAATTGATGTTAATGAGGCAAAACTGTTTCCTCAAACAAGAGGGTCGTTTTTGGAATTTCCAAAGGATGATTCATTGCCGCCACAGGCTGAGGAGAGGAAGCCTAGGAAGAGAGGGAGAAAGCCAGCCAATGGGAGAGAAGAACCGTTAAACCATGTGGAAGCAGAGCGGCAAAGGCGGGAGAAGCTTAACCAGCGTTTCTATGCCTTAAGAGCTGTTGTCCCTAATATCTCTAAGATGGACAAGGCCTCTTTGCTTGGAGATGCCATTACCTATATAACTGATCTTCAGATGAAGATTAAGGTTTTGGAAACGGAAAAACAGATTGTGGGCGATAATGAGAAGCGGTTTTCAGAAACCGAAATTGATTTTCAGGCAAGGGAGGAGGATTCCGTTGTGAGGGTGAGTTGCCCGCTTGATTCTCACCCGGTTTCTAGAGTGATCCATACGTTTAGAGAGCATCAGATTGTTGCTCAAGACTCCAATGTTTCCACGACTGAGAATGACAGAGTGGTTCATTCTTTCTCCATTCGACCTCAAGGTGGGTCCGCCGAGCAATTGAAGGAGAAGTTAGTGGCTGCCCTCTCTAAATGA 1476 44.51 MGEKFWENEEDKTMVESIVGTEASQFLISLASRDFLSEIVTPPPPAGDLGVQRGLYELVHGSNWNYAIFWRAVGLKSGSSTLIWADGHCSDPKSDGVGQFGEDEKNREVKRQVLRKLQTSFGRFSETNYLPKPDDFFSDLEMFYLTSMYFAFPCDSASGPPGELYKSGKSIWASEIGTCLHNYPSRALLARSVGFQTAVFVPVKSGVVELGSVKSIPEEQNVLEMVKTMFGDHSSSLQSKAVPKIFGRELSLGSKSLSINFSPKVEDDTVFTSDAYEIQALGTNNIYRNSSNGSPIDVNEAKLFPQTRGSFLEFPKDDSLPPQAEERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIKVLETEKQIVGDNEKRFSETEIDFQAREEDSVVRVSCPLDSHPVSRVIHTFREHQIVAQDSNVSTTENDRVVHSFSIRPQGGSAEQLKEKLVAALSK 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9647855 9649935 + Conep04aG0116400.1 Cone4ag1118 436096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1118 491 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 230 IPR025610 -
Cone4ag1118 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 402 IPR036638 GO:0046983(InterPro)
Cone4ag1118 491 Pfam Helix-loop-helix DNA-binding domain 345 391 IPR011598 GO:0046983(InterPro)
Cone4ag1118 491 Gene3D - 334 406 IPR036638 GO:0046983(InterPro)
Cone4ag1118 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 341 390 IPR011598 GO:0046983(InterPro)
Cone4ag1118 491 SMART finulus 347 396 IPR011598 GO:0046983(InterPro)
Cone4ag1118 491 MobiDBLite consensus disorder prediction 311 352 - -
Cone4ag1118 491 ProSiteProfiles ACT domain profile. 426 491 IPR002912 -
Cone4ag1118 491 CDD bHLH_AtAIB_like 338 413 - -
Cone4ag1118 491 MobiDBLite consensus disorder prediction 319 352 - -
Cone4ag1118 491 FunFam Transcription factor bHLH13 334 408 - -
Cone4ag1118 491 PANTHER MYC 49 491 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1118 Cone-Chr4:9647855 Cone8ag0471 Cone-Chr8:3119283 1.92E-30 dispersed
Cone4ag1118 Cone-Chr4:9647855 Cone7ag1014 Cone-Chr7:7847175 5.02e-312 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45979 PF00332 Glyco_hydro_17 3.30E-65 CL0058 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1118 - - - 0.0