Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1122 ATGGCATCTAGTGGTTGCGGTGGCAGCGGCAGCAGCTCTCCCTGCGGAGCATGTAAGTTTCTGCGTCGGAAGTGTGCACCAGATTGCATTTTTGCTCCGTACTTCTGCTCGGAGCAAGGGCCTGCCCGTTTTGCAGCGATCCATAAAGTATTTGGTGCTAGTAATGTGTCTAAGTTATTGTTACATATCCCGGTTGCCGATCGATGTGAAGCCGTTGTTACTATAGCTTATGAAGCTCAAGCCAGGATTAAAGATCCTGTTTATGGTTGTGTTTCTCATATATTTGCTCTCCAACAACAGGTGGCATGGCTTGAAGCTCAACTTATGCAAACCAAGGCACAACTAGCTCATCAAAGCATCGTGAATTCACGTAACATAGAGAATAAATGGGCAGGAAATTACATGAGTGAAGTCCCAGGCTTTGCATCTTATAATCCTACTCAACTCAATTCCATTTCACCTCAAAGCTCGCACGAATCCGTCGATCATAGCATCAATAACGATCCGATGTGTACGCAAGAGATACAAAGCCGAGATCACGATCAAGAACTCTGTCATGAATTTCAACCTAATTACTATTCTACGAAGAGACCGTGCAATAATTATAGTAATGGTGATGACTTAAGCGAGCTTCAAGCACTGGCTTTTAGAATGATGAGAAACTAG 666 43.84 MASSGCGGSGSSSPCGACKFLRRKCAPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPVADRCEAVVTIAYEAQARIKDPVYGCVSHIFALQQQVAWLEAQLMQTKAQLAHQSIVNSRNIENKWAGNYMSEVPGFASYNPTQLNSISPQSSHESVDHSINNDPMCTQEIQSRDHDQELCHEFQPNYYSTKRPCNNYSNGDDLSELQALAFRMMRN 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9698498 9699354 + Conep04aG0116800.1 Cone4ag1122 436100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1122 221 ProSiteProfiles LOB domain profile. 13 115 IPR004883 -
Cone4ag1122 221 Pfam Lateral organ boundaries (LOB) domain 14 112 IPR004883 -
Cone4ag1122 221 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 184 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1122 Cone-Chr4:9698498 Cone7ag1008 Cone-Chr7:7775944 3.12E-138 dispersed
Cone3ag0542 Cone-Chr3:2684662 Cone4ag1122 Cone-Chr4:9698498 1.06E-45 transposed
Cone4ag1122 Cone-Chr4:9698498 Cone7ag1007 Cone-Chr7:7769199 1.33E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45980 PF04146 YTH 7.80E-06 CL0178 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1122 K13944 - gmx:100801508 270.781