Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1128 ATGTCGTGGGACGACGTAGATTCCACCCCATTCAGCGCAACTGACTCATTCTGGGAAGGGAAAGTAGATTTCCTCTCTGAATTTGTAGTCAAGGAAGAAGAGGGAGTACTCGGATCAGTAGCTGGTAATTCCGTCTCGAAAAACGAAGAACAGCCCATGAAGGAAAAATCGTATAGAGGGGTAAGGAAGAGGCCATGGGGAAAATATGCAGCAGAGATAAGGGATTCAACAAGGCATGGGATCAGGGTTTGGCTTGGAACATTCGATACAGCAGAGGAAGCTGCTTTAGCATATGATCAAGCTGCATTTGCAATGAGAGGCTCTTTGGCTGTTCTTAATTTCCCGGTCGAAATCGTGAGGGAGTCTCTATCAGAAATGGAGTTTGAAGCTCGCGACGGGTGCTCGCCGGTCATGGTGCTTAAGAGTAAGCACACGATGAGAAAGAAGAAGAAGGTTTTAGGTAGTAAGAGTAAAGGCGTAGCAAAGAGGAAGAGTGATAATTTGATGGTGTTGGAGTTGGAGGATTTGGGTGTTGATTATTTGGAGGAGCTTTTGAGGGTAAGCTCATGTGTCGAAAGTGCAAATTATGGCCGCTGA 597 46.06 MSWDDVDSTPFSATDSFWEGKVDFLSEFVVKEEEGVLGSVAGNSVSKNEEQPMKEKSYRGVRKRPWGKYAAEIRDSTRHGIRVWLGTFDTAEEAALAYDQAAFAMRGSLAVLNFPVEIVRESLSEMEFEARDGCSPVMVLKSKHTMRKKKKVLGSKSKGVAKRKSDNLMVLELEDLGVDYLEELLRVSSCVESANYGR 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9736830 9737426 + Conep04aG0117400.1 Cone4ag1128 436106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1128 198 Gene3D AP2/ERF domain 56 117 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1128 198 PANTHER DNA-BINDING DOMAIN 48 150 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone4ag1128 198 SMART rav1_2 57 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1128 198 SUPERFAMILY DNA-binding domain 57 117 IPR016177 GO:0003677(InterPro)
Cone4ag1128 198 Pfam AP2 domain 57 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1128 198 FunFam Ethylene-responsive transcription factor 2 56 117 - -
Cone4ag1128 198 ProSiteProfiles AP2/ERF domain profile. 57 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1128 198 CDD AP2 56 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1128 198 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1128 198 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0653 Cone-Chr10:3151879 Cone4ag1128 Cone-Chr4:9736830 5.07E-52 dispersed
Cone4ag1128 Cone-Chr4:9736830 Cone7ag1000 Cone-Chr7:7732787 9.87E-107 dispersed
Cone4ag1127 Cone-Chr4:9730501 Cone4ag1128 Cone-Chr4:9736830 2.17E-25 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45982 PF09229 Aha1_N 3.90E-24 CL0648 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1128 K14516 - csv:101220325 194.897