Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1137 ATGGAAACAACATCTGTAAGATGCCTTATTAACAGTATATCCAGGTTCATTCATCTAGTTTCCTGCCAGACAATAAAGCCTCTGCCTATTCAGAAGGAGTATACAGATGTGGTTGGTTTGTTAAAGCTTTTGAAACCGGTTCTCGATGATGTTGTGGACTACAAAATCCCTTCGGATGAGTTCCTTTTTAGAGAGTGTGAAGCATTGGATGTACTTGTTAACGAGGCTCGGGAATTTTTGGAAAATTGGGGCCCAAAGATGAGCAGAATCTGTGCCGTTTTGAGGAGTGAGCCATTGTTGATGCAAATAGAAAGTTCCTTGCAAGCAGTATGTCGAATGATTAGCAAATTGTCTCAGACTTCTTCATCTAGCTCAAAACAAACAGCTCTTCAGCAATGTATGCAAAGCCTTCAATCTTTAAAGCAAGAAAGAATATCCCGATACATAGAAGAGGCTTTGAAGAGTCAAAAAGATGATATCAGTCCTTGTAACGAACATCTCATCAGAATTACTGAGTCACTTGGTCTGAACTCAAACCAGGAACTTTTGAAAGAGAGTGTGGCTGTAGAAAAGGAGAGAATGAAAGCCGAAGAAAATGAAGCAAAGAAGGAATTACAGCTAATGAACCAAATAGTGGATCTTGTCTCCTATATAAGAGATTGGATGGTTAAAACTGAACGCGTTGAAGGGATAAATGGGGTCTCAATTCCGTCCTATTTCCGCTGCCCTTTGTCATGGGAACTTATGTTGGATCCAGTAATAGTGGCATCGGGCCAAACTTATGATCGGGGCTCGATCCAAAAGTGGCTTGATCATGGCCTTATCATTTGCCCAAAAACCCGTCGGGTGCTTTCACATACAAATCTCATCCCCAATTATACTGTCAAAGCTATGATAGCAAATTGGTGTGAAGAAAATGAATTGACAATTTCCAACAAATTTAGGCACAATCTCTCTTCTCTTTCTTCATCTCCATCAGGTCATGTAGCTAAGTATTCCAATGCAAGATCATTCCCTGAGGTTGGTAATGGGTCCGAGAAGCAAAAAGAAGACATCTCTTCTCAATCGAATGGAGGGAGATCCAACGGATGCAAGAGCAGCGAAACTGAAAAGTCTGACCATTCATATATTTATAGGAGTGGATCAGCTTCTAGTGCCATGTCCACTATTGACCATATTTTATTGGGATTGAATGAAAGTGTAGATGAATTATCAGGCGAAATCACATCCAAATTTCCCAACACTTCTCCAAATAAAGAATCTCCATATTCTTTCGGATTAGCAGAACAACATTTGCAGAGCATAAAAACAAATGTGGACATCAAAGAGAATGAGACTTGTAAACAAGTGAGAGATCAAGCACTTTTGAACTCAGATTCAGGATCTAATACATCAATTCCCAACTCACATATAAAGAAATTAGTTGAAGATCTTAAGAGCCAAAGGGATGACCTGAAAACTAAAGCAGCTGAAGAATTGAGGCTCCTTGCAAAGGACAACAAGGAGAATCGTGTCATCATAGGAAATTGTGGGGCCATATCCTCTTTAATGTCACTCCTCTATTCCGAGGAGGAGTTAACTCAAGAGCATTCTGTAACAGCCCTTTTGAATTTATCAATTGATGATAACATTAAGGCCAGGATTGCAGAGGCAGGAGCCATAAAACCGCTTATTCACGTGCTTAAAACCGGTAATGATGTAGCCAAAGAGAATTCTGCTGCTTCCCTATTCAGTCTCTCTCTCTTAGAAGAATATAAGGCAAAAATCGGCCGTTCCGGTGCAATTATAGCATTGGTGGACCTTTTAGCTTCAGGGACTCTGAGAGGGAAGAAAGATGCAGCCACGGCTCTTTTTAACCTATCAATTTTCCATGAAAATAAGGTCCGGATAGTTCAAGCAGGAGCTGTGAAGTATCTAATTGAGTTGTTAGACCCTTCTACAGGGATGACTGATAAGGCTGCTGCCCTTCTAGCAAACTTGTCCACAGTTGGGGAGGGCCGTTTGGCACTTGTGAAGCAAGGGGGAATTCCCTTATTGGTTGAAATGGTTGAATCTGGGTCTCAGAGGGGAAAGGAGAATGCTGCCTCCATACTATTGCAGCTATGTCTTAATAGCTCTAAGTTCTGTACATTGGTTTTGCAAGAAGGAGCGGTGCCTCCCCTTGTTAGTTTATCTCAGTGTGGCACGACAAGAGCAAAGGAAAAGGCACAGCAACTTCTGAGTCACTTTCGGAATCAGCGTGAAGCGGGTGTAAGGAAATTGAAAACATGA 2271 41.35 METTSVRCLINSISRFIHLVSCQTIKPLPIQKEYTDVVGLLKLLKPVLDDVVDYKIPSDEFLFRECEALDVLVNEAREFLENWGPKMSRICAVLRSEPLLMQIESSLQAVCRMISKLSQTSSSSSKQTALQQCMQSLQSLKQERISRYIEEALKSQKDDISPCNEHLIRITESLGLNSNQELLKESVAVEKERMKAEENEAKKELQLMNQIVDLVSYIRDWMVKTERVEGINGVSIPSYFRCPLSWELMLDPVIVASGQTYDRGSIQKWLDHGLIICPKTRRVLSHTNLIPNYTVKAMIANWCEENELTISNKFRHNLSSLSSSPSGHVAKYSNARSFPEVGNGSEKQKEDISSQSNGGRSNGCKSSETEKSDHSYIYRSGSASSAMSTIDHILLGLNESVDELSGEITSKFPNTSPNKESPYSFGLAEQHLQSIKTNVDIKENETCKQVRDQALLNSDSGSNTSIPNSHIKKLVEDLKSQRDDLKTKAAEELRLLAKDNKENRVIIGNCGAISSLMSLLYSEEELTQEHSVTALLNLSIDDNIKARIAEAGAIKPLIHVLKTGNDVAKENSAASLFSLSLLEEYKAKIGRSGAIIALVDLLASGTLRGKKDAATALFNLSIFHENKVRIVQAGAVKYLIELLDPSTGMTDKAAALLANLSTVGEGRLALVKQGGIPLLVEMVESGSQRGKENAASILLQLCLNSSKFCTLVLQEGAVPPLVSLSQCGTTRAKEKAQQLLSHFRNQREAGVRKLKT 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9801752 9805497 + Conep04aG0118300.1 Cone4ag1137 436115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1137 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 593 635 IPR000225 GO:0005515(InterPro)
Cone4ag1137 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 511 553 IPR000225 GO:0005515(InterPro)
Cone4ag1137 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 311 IPR013083 -
Cone4ag1137 756 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag1137 756 CDD RING-Ubox_PUB 237 289 IPR045210 -
Cone4ag1137 756 Gene3D - 454 753 IPR011989 -
Cone4ag1137 756 Coils Coil 468 495 - -
Cone4ag1137 756 SMART arm_5 663 703 IPR000225 GO:0005515(InterPro)
Cone4ag1137 756 SMART arm_5 623 662 IPR000225 GO:0005515(InterPro)
Cone4ag1137 756 SMART arm_5 582 622 IPR000225 GO:0005515(InterPro)
Cone4ag1137 756 SMART arm_5 541 581 IPR000225 GO:0005515(InterPro)
Cone4ag1137 756 SMART arm_5 500 540 IPR000225 GO:0005515(InterPro)
Cone4ag1137 756 SMART Ubox_2 239 302 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag1137 756 MobiDBLite consensus disorder prediction 348 365 - -
Cone4ag1137 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 634 675 IPR000225 GO:0005515(InterPro)
Cone4ag1137 756 SUPERFAMILY RING/U-box 233 309 - -
Cone4ag1137 756 PANTHER U BOX DOMAIN-CONTAINING 30 747 - -
Cone4ag1137 756 Coils Coil 179 211 - -
Cone4ag1137 756 Pfam Armadillo/beta-catenin-like repeat 584 621 IPR000225 GO:0005515(InterPro)
Cone4ag1137 756 Pfam Armadillo/beta-catenin-like repeat 500 539 IPR000225 GO:0005515(InterPro)
Cone4ag1137 756 Pfam Armadillo/beta-catenin-like repeat 666 702 IPR000225 GO:0005515(InterPro)
Cone4ag1137 756 SUPERFAMILY ARM repeat 463 743 IPR016024 -
Cone4ag1137 756 MobiDBLite consensus disorder prediction 336 373 - -
Cone4ag1137 756 FunFam RING-type E3 ubiquitin transferase 456 749 - -
Cone4ag1137 756 Pfam U-box domain 236 307 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1137 Cone-Chr4:9801752 Cone6ag1431 Cone-Chr6:11480343 1.94E-83 dispersed
Cone4ag1137 Cone-Chr4:9801752 Cone4ag1146 Cone-Chr4:9843711 1.34E-19 proximal
Cone4ag1137 Cone-Chr4:9801752 Cone7ag0992 Cone-Chr7:7652318 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1137 - - - 0.0