Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1146 ATGGCAAAGTCAAGACTCTCCGATTCCGATCCGGCTTTGGCGGCGGCGAAGGCGGCTGATTTGAAGCTAGAGCTTCGGAGACTGGTCAGGACTATCATCGACGATGACGATTACGGTGTTGAAACAATCGATCAGGCTAAAGAGACACTCTCTATCCTCAAGGAATTGAAGCTTTTCCGGAAGAGATCGCTCTCGTCGGAGCTCCCTCAGACACCTACTATCGCTTGCCCTGACGAATTTCGTTGTCCGATTTCTAAGGAATTGATGAGAGATCCTGTGATTTTGTCTACCGGTGAGACATATGACAGACCCTTCATACAAAGATGGTTAAAAGCAGGTAATAGGACATGCCCTAAGACTCAACAAGTTCTTTCACACACAATCCTTACTCCCAATCACTTGATCCGAGGGATGATAACTCAATGGTGTAAAAACCAAGGAATAGAATCCTCAAATCCTGCTGAATACCTTAATGAGGTGGGCATCACTGAAGCAGATCGGAACCAATTCCAAATCTTGCTCGAGAGGATGTCTTCATCAATTCCATCTGAGCAGAAAGAGGCAGCAAAAGAGCTTCGCTTGTTGACAAAGCAGATGCCCTCATTTCGGGCACTTTTCGGAGAGTCTATAAATTCCATCTCTTCATTACTTACTCCCCTCTCTCAAGGCAAGTCGCATGATAGTGTTATTATACACTCTGGTCTCCAAGAAGATGTGATTACAACGCTTCTAAATCTATCAATCCATGACAGCAACAAGAAGCTTGTGGCTGAGACGCCTATGGCGATTCCTCTCCTTGTGGATGCATTGAGATCAGGCACCGTAGAGACGCGGAGAAATGCAGCTGCTACCCTTTTCACTTTATCGGCTCTTGATTCGAACAAGAACCTTATTGGGAAATCTGGTGCCTTGAAACCTCTCATTGACCTCTTAGAAGAAGGGCATCCTCTTGCCATGAAAGATGTAGCTTCTGCCATTTTTAATCTCTGTATTTTACATGAGAACAAAGCACGAGCAGTAGGGGATGGAGCGGTAAGAGTGATGTTGAAGAAGATTGTTAATGGGGCCCATGTGGATGAGTTATTAGCTATCCTTGCAATGGTTTCAAGCCATCAAAGGGCAGTAGAGGAAATGGGAGAGCTTGGAGCTGTGCCTTGCTTGCTAAGCATCATAAGGGAGAGTTCTTGTGGAAGAAACAAGGAGAACTGCATTGTAATCCTGCATGCTGTTTGTTTGAATGATAGAACAAAGTGGAAGGAACTGAGGGAAGAGGAGAAGAGACATGGAACTATTTCTGAGCTTTCTCAGAATGGAAGTTCTAGGGCAAAGAGAAAGGCCAGTGGCATACTTGAGAGACTTAACAGGGCTGTTAATATCACCCACACTGCATAA 1392 45.04 MAKSRLSDSDPALAAAKAADLKLELRRLVRTIIDDDDYGVETIDQAKETLSILKELKLFRKRSLSSELPQTPTIACPDEFRCPISKELMRDPVILSTGETYDRPFIQRWLKAGNRTCPKTQQVLSHTILTPNHLIRGMITQWCKNQGIESSNPAEYLNEVGITEADRNQFQILLERMSSSIPSEQKEAAKELRLLTKQMPSFRALFGESINSISSLLTPLSQGKSHDSVIIHSGLQEDVITTLLNLSIHDSNKKLVAETPMAIPLLVDALRSGTVETRRNAAATLFTLSALDSNKNLIGKSGALKPLIDLLEEGHPLAMKDVASAIFNLCILHENKARAVGDGAVRVMLKKIVNGAHVDELLAILAMVSSHQRAVEEMGELGAVPCLLSIIRESSCGRNKENCIVILHAVCLNDRTKWKELREEEKRHGTISELSQNGSSRAKRKASGILERLNRAVNITHTA 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9843711 9845953 + Conep04aG0119200.1 Cone4ag1146 436124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1146 463 CDD RING-Ubox_PUB 77 129 IPR045210 -
Cone4ag1146 463 SMART arm_5 291 331 IPR000225 GO:0005515(InterPro)
Cone4ag1146 463 SMART arm_5 249 290 IPR000225 GO:0005515(InterPro)
Cone4ag1146 463 FunFam RING-type E3 ubiquitin transferase 160 459 - -
Cone4ag1146 463 FunFam RING-type E3 ubiquitin transferase 75 149 - -
Cone4ag1146 463 PANTHER U BOX DOMAIN-CONTAINING 21 454 - -
Cone4ag1146 463 Pfam U-box domain 77 146 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag1146 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 149 IPR013083 -
Cone4ag1146 463 SUPERFAMILY ARM repeat 167 453 IPR016024 -
Cone4ag1146 463 Gene3D - 158 462 IPR011989 -
Cone4ag1146 463 SMART Ubox_2 79 142 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag1146 463 SUPERFAMILY RING/U-box 73 149 - -
Cone4ag1146 463 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1146 Cone-Chr4:9843711 Cone5ag0357 Cone-Chr5:1515471 6.78E-44 dispersed
Cone4ag1137 Cone-Chr4:9801752 Cone4ag1146 Cone-Chr4:9843711 1.34E-19 proximal
Cone10ag0625 Cone-Chr10:2978931 Cone4ag1146 Cone-Chr4:9843711 5.02E-132 transposed
Cone4ag1146 Cone-Chr4:9843711 Cone7ag0984 Cone-Chr7:7594941 2.65E-262 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1146 K27971 - mdm:103412155 652.899