Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1147 ATGTGTCGTTTAGTCTTCCCTCCTACATATATCCGGCATTCTTTGATCGGAGACTCGTTTCGCTTATTAAAAAAATGGGGCCGGGTGGGGTCTTTTCAGGGGCGGCCAAGCAGGCGGAGCAGCTCAGAATGGACGGCAACACTTACTTCAATAAAGATCGTTTCGGAGCCGCCATCGATGCTTACACCGAGTGACTGGACGAAGGTGGAGAACGACTGTAGAAGAGCACTTCAGCTTGAGAACAATTCTGTCAAGGCCCACTATATGTTGGGACTGGCATTAATACAGAAGGATGAGTACCCGGAAGGGATCAAGCAATTGGAGAAGGCCTTGGAACTTGGTAGGGGTGCCAATCGCAAGAGTTATATGGTAGAAGAGATTTGGCAGGAGCTTGCGAAAGCTAAATACTCAGAATGGGAGCTAGCATCAACCAAACGTTCATGGGAATTGCAAAACCTGATAGAAGCCTGCGAGACTGCTCTTAAGCAAAAGCATTTTCTTGACAACTCTGATTCCGAAGGATTCTTGGATGAAGCTGACATTACCATCACAAAACAATTAGACACTCTAGATCGTGTCTTCCGGGAAGCCTCTGAAGGTGAAGTTCCATCTGAGGTACCCGATTACCTTTGTTGTAAAATCACACTCGATATTCTTCGTGATCCTGTCATTACCCCTAGCGGGATTACATATGAGAGAGAGGTGATTCTTGACCATATTCACAAGGTGGGTAATTTTGACCCTGTGACACGGGAGCCTCTCTATGAATCTCAGCTTGTACCGAACCTGGGCCTAAAGGAAGCAGTCCAGGCATTTCTAGAAAGACATGGTTGTAAAATCCTACATACCAACTAA 855 46.2 MCRLVFPPTYIRHSLIGDSFRLLKKWGRVGSFQGRPSRRSSSEWTATLTSIKIVSEPPSMLTPSDWTKVENDCRRALQLENNSVKAHYMLGLALIQKDEYPEGIKQLEKALELGRGANRKSYMVEEIWQELAKAKYSEWELASTKRSWELQNLIEACETALKQKHFLDNSDSEGFLDEADITITKQLDTLDRVFREASEGEVPSEVPDYLCCKITLDILRDPVITPSGITYEREVILDHIHKVGNFDPVTREPLYESQLVPNLGLKEAVQAFLERHGCKILHTN 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9846684 9848967 - Conep04aG0119300.1 Cone4ag1147 436125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1147 284 CDD RING-Ubox_CHIP 206 276 IPR045202 -
Cone4ag1147 284 Pfam U-box domain 206 276 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag1147 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 280 IPR013083 -
Cone4ag1147 284 ProSiteProfiles TPR repeat profile. 84 117 IPR019734 GO:0005515(InterPro)
Cone4ag1147 284 SUPERFAMILY TPR-like 65 133 IPR011990 GO:0005515(InterPro)
Cone4ag1147 284 Gene3D Tetratricopeptide repeat domain 45 146 IPR011990 GO:0005515(InterPro)
Cone4ag1147 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 64 278 - GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER)
Cone4ag1147 284 SUPERFAMILY RING/U-box 198 279 - -
Cone4ag1147 284 ProSiteProfiles U-box domain profile. 205 279 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag1147 284 SMART Ubox_2 209 272 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1147 Cone-Chr4:9846684 Cone11ag0256 Cone-Chr11:1235455 8.40E-09 dispersed
Cone4ag1147 Cone-Chr4:9846684 Cone7ag0983 Cone-Chr7:7591813 6.81E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1147 K09561 - csv:101215457 334.724