Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1151 ATGATGAAGTTTTCACGCCTGCTGAGGTCCAGGAAACCTGTTGATGTTAGAGATGCTATTTTGTTGCGGTCTTTTTCATCCCGAGCTGGCTTTACCAAAAATGATCAGAACTCTGCTGCTATAGGAAATACAACTGATCGGATATTTGCTCCTTATTCTGTATTCAAGGGCAAAGCTGCTCTCTCTATTAGTCCTGTTCCTCCAACTTTCACCAAATTGGAGTATGGGGCTGTTGTAGTGCAGCGCCGTGGCGTAATGATGTTGAAATTCTTGCCTGCCATTGGTGAGCGCAAGTATGACTCAGAAAAGAAGCAGTTATTTGCTTTGTCAGCGACAGAGCTTGGCACTTTGATTAGTATAGGTCCCAAAGATTCTTGTGAATTCTTCCATGACCCTTCAATGAAATCAAGCAATGCTGGTCAAGTCAGGAAGAGCTTATCGATTAAGCCTGCTATGGATGGTAATGGCTATTTCATCTCTTTGATGGTTGTTGATAATACTCAAAAAACCAGAGAAAACTTCAGCATTCCTGTCACCGCCGGCGAATTTTCTGTAATGAAGACAGCTTGCAGTTTTGCATTGCCCCACATTATGGGGTGGGATCGACTGACTAACCCGCCGAACTCAACAGGAGTGCCTACAACAGCAAAAGTGAATCCTAAATTTTCAGAACTCGAGTGGGATAGGTGA 690 43.62 MMKFSRLLRSRKPVDVRDAILLRSFSSRAGFTKNDQNSAAIGNTTDRIFAPYSVFKGKAALSISPVPPTFTKLEYGAVVVQRRGVMMLKFLPAIGERKYDSEKKQLFALSATELGTLISIGPKDSCEFFHDPSMKSSNAGQVRKSLSIKPAMDGNGYFISLMVVDNTQKTRENFSIPVTAGEFSVMKTACSFALPHIMGWDRLTNPPNSTGVPTTAKVNPKFSELEWDR 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9869591 9871871 + Conep04aG0119700.1 Cone4ag1151 436129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1151 229 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 26 229 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cone4ag1151 229 Pfam Whirly transcription factor 54 188 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cone4ag1151 229 Gene3D Transcriptional Coactivator Pc4; Chain A 39 210 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone4ag1151 229 SUPERFAMILY ssDNA-binding transcriptional regulator domain 46 221 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1151 Cone-Chr4:9869591 Cone9ag0613 Cone-Chr9:2905174 1.38E-49 dispersed
Cone4ag1151 Cone-Chr4:9869591 Cone7ag0977 Cone-Chr7:7569959 1.01E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45983 PF00006 ATP-synt_ab 4.90E-109 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1151 K26561 - mtr:11433338 283.493