Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1151 ATGATGAAGTTTTCACGCCTGCTGAGGTCCAGGAAACCTGTTGATGTTAGAGATGCTATTTTGTTGCGGTCTTTTTCATCCCGAGCTGGCTTTACCAAAAATGATCAGAACTCTGCTGCTATAGGAAATACAACTGATCGGATATTTGCTCCTTATTCTGTATTCAAGGGCAAAGCTGCTCTCTCTATTAGTCCTGTTCCTCCAACTTTCACCAAATTGGAGTATGGGGCTGTTGTAGTGCAGCGCCGTGGCGTAATGATGTTGAAATTCTTGCCTGCCATTGGTGAGCGCAAGTATGACTCAGAAAAGAAGCAGTTATTTGCTTTGTCAGCGACAGAGCTTGGCACTTTGATTAGTATAGGTCCCAAAGATTCTTGTGAATTCTTCCATGACCCTTCAATGAAATCAAGCAATGCTGGTCAAGTCAGGAAGAGCTTATCGATTAAGCCTGCTATGGATGGTAATGGCTATTTCATCTCTTTGATGGTTGTTGATAATACTCAAAAAACCAGAGAAAACTTCAGCATTCCTGTCACCGCCGGCGAATTTTCTGTAATGAAGACAGCTTGCAGTTTTGCATTGCCCCACATTATGGGGTGGGATCGACTGACTAACCCGCCGAACTCAACAGGAGTGCCTACAACAGCAAAAGTGAATCCTAAATTTTCAGAACTCGAGTGGGATAGGTGA 690 43.62 MMKFSRLLRSRKPVDVRDAILLRSFSSRAGFTKNDQNSAAIGNTTDRIFAPYSVFKGKAALSISPVPPTFTKLEYGAVVVQRRGVMMLKFLPAIGERKYDSEKKQLFALSATELGTLISIGPKDSCEFFHDPSMKSSNAGQVRKSLSIKPAMDGNGYFISLMVVDNTQKTRENFSIPVTAGEFSVMKTACSFALPHIMGWDRLTNPPNSTGVPTTAKVNPKFSELEWDR 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9869591 9871871 + Conep04aG0119700.1 Cone4ag1151 436129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1151 229 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 26 229 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cone4ag1151 229 Pfam Whirly transcription factor 54 188 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cone4ag1151 229 Gene3D Transcriptional Coactivator Pc4; Chain A 39 210 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone4ag1151 229 SUPERFAMILY ssDNA-binding transcriptional regulator domain 46 221 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1151 K26561 - - mtr:11433338 283.493
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1151 Cone-Chr4:9869591 Cone9ag0613 Cone-Chr9:2905174 1.38E-49 dispersed
Cone4ag1151 Cone-Chr4:9869591 Cone7ag0977 Cone-Chr7:7569959 1.01E-43 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone9ag0613 . 23 279 Whirly Transcription Factor Family AT1G14410 64.3 2.4e-93 339.3
Cone4ag1151 . 1 229 Whirly Transcription Factor Family AT1G71260 55.3 1.2e-62 237.3
Cone9ag0613 . 21 279 Whirly Transcription Factor Family AT2G02740 65.8 4.5e-95 345.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45983 PF00006 ATP-synt_ab 4.90E-109 CL0023 Cone TF