Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag1152 | ATGGCTTATAATCATTTAGATCCATCAAAATTCAACTCGAATGTTTCAGAAGAAAGTCCAAATACAAAATCATCACCACCCGAGCTCAAGATCTACCAGTTTTTCATATTCTGCGTCCCTATCCTTTGCACTTTCCTCATTCTCTTCTTCTTCTACTTGCTCTATCTCCGTCGTAGAAGGCACAGCTGGCCCACTGTTCCGATGCAAAGGTCTTCTCTCTCAAATAATACCTCCACCAGAGCTGAGACGGGTTTGAAGAAAGAAGTAAGAGAGATGCTACCCATTGTTGTGTATACGGAGAGCTTCTCAGTCACTGATACACATTGTTCAGTATGCCTGGGGGAATACAAAGCGGAGGAAAGGGTTCAACAACTACCAGCTTGTGGGCATATGTTTCACATGGACTGTATTGATCACTGGCTCTCTACTCAAACCACTTGCCCCCTTTGTCGTTTATCTGTCCTTTCTCCTTCTCCTTCACCTTCTCCTTCTTCTAATGATAATATTGAAAATCAACCTCCTTCAAATTTGCCTCATGATCTTCACCATCAGATTTTATCAATCGATGGCTCTGTTACTTAA | 582 | 42.1 | MAYNHLDPSKFNSNVSEESPNTKSSPPELKIYQFFIFCVPILCTFLILFFFYLLYLRRRRHSWPTVPMQRSSLSNNTSTRAETGLKKEVREMLPIVVYTESFSVTDTHCSVCLGEYKAEERVQQLPACGHMFHMDCIDHWLSTQTTCPLCRLSVLSPSPSPSPSSNDNIENQPPSNLPHDLHHQILSIDGSVT | 193 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 9872224 | 9873375 | - | Conep04aG0119800.1 | Cone4ag1152 | 436130 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag1152 | 193 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 156 | IPR013083 | - | |
| Cone4ag1152 | 193 | MobiDBLite | consensus disorder prediction | 158 | 178 | - | - | |
| Cone4ag1152 | 193 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 17 | 174 | - | - | |
| Cone4ag1152 | 193 | FunFam | RING-H2 finger protein ATL7 | 75 | 157 | - | - | |
| Cone4ag1152 | 193 | CDD | RING-H2_EL5-like | 109 | 151 | - | - | |
| Cone4ag1152 | 193 | SUPERFAMILY | RING/U-box | 93 | 159 | - | - | |
| Cone4ag1152 | 193 | ProSiteProfiles | Zinc finger RING-type profile. | 109 | 151 | IPR001841 | - | |
| Cone4ag1152 | 193 | SMART | ring_2 | 109 | 150 | IPR001841 | - | |
| Cone4ag1152 | 193 | Pfam | Ring finger domain | 108 | 151 | IPR001841 | - | |
| Cone4ag1152 | 193 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cone4ag1152 | 193 | MobiDBLite | consensus disorder prediction | 7 | 25 | - | - | |
| Cone4ag1152 | 193 | MobiDBLite | consensus disorder prediction | 158 | 181 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone4ag1152 | Cone-Chr4:9872224 | Cone7ag0829 | Cone-Chr7:6205530 | 2.06E-16 | dispersed | |
| Cone4ag1152 | Cone-Chr4:9872224 | Cone7ag0976 | Cone-Chr7:7568317 | 1.10E-84 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag1152 | K19039 | - | csv:101219324 | 187.963 |