Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1154 ATGGAGGCGATCGAGGAGTTGGCGGAGCTATCCGAGTCGATGCGGCAGGCTGCAGCTTTACTTGCCGATGAGGATGTGGACGAGAATTCTAACCCCGCTGGTTCTTCTCGTAGGGCTTCGACTTTTCTCAACGTTGTGGCTCTCGGCAATGTTGGTGCTGGTAAATCTGCAGTTTTGAATAGTTTGGTTGGACATCCTATCCTGCCCACTGGTGAAAATGGTGCTACACGCGCTCCCATAAGCATTGATTTACAGAGGGATGGTTCTTTGAGCACTAAATCGATAATTTTACAGATTGATAATAAATCTCAGCAAGTTTCAGCAAGTGCTCTACGACATTCTTTACAAGATAGGTTGAGTAAGGGTTCCACAGGAAAGAGCCGAGATGAAATAAATTTGAAGCTTCGCACGAGCACAGCACCTCCCCTGAAGTTGATTGATTTACCTGGGCTGGATCAACGTACTGTAGATGAATCAATGGTCAGTGAATATGGTGAACACAATGATGCCATTTTGCTAGTTATAGTACCTGCTGCCCAAGCACCTGAGATTTCTTCGTCTAGAGCTCTCAAAGTTGCCAAGGAATATGATTCAGAAGGTACCAGGACCATTGGTGTTATTAGCAAAATAGATCAAGCTGCTTCGGAACAAAAGGCTCTTGCTGCAGTGCAGGCTCTCCTGTTAAACCAAGGGCCACCACGGGCATCAGATATCCCATGGGTTGCTTTAATTGGTCAGTCGGTCTCAATAGCTTCTGCTCAGTCTGGATCTGTGGGATCTGAAAATTCCTTGGAAACTGCCTGGAGGGCAGAAAGTGAAAGTCTTAAATCTATACTTACTGGAGCTCCCCAGAGTAAGCTAGGAAGGATAGCTTTGGTGGATGCTTTGTCGCAACAAATTCGTAACCGCATGAAAATCCGGCTTCCAAATCTCTTATCTGGGTTACAAGGGAAGTCTCAAATAATTCAAGACGAGTTAGTAAGGCTTGGTGAGCAAATGATCCAAAGTCCCGAGGGAACTAGAGCCGTAGCTTTGGAACTTTGTCGTGAATTTGAGGATAAGTTTCTGCAGCACATTGCAACTGGAGAGGGTGCTGGTTGGAAAATTGTTGCCAGCTTTGAAGGAAACTTTCCAAACAGAATCAAGCAGCTACCTTTAGACAGACACTTTGATATTAATAATGTGAAGAGGATTGTGTTGGAAGCTGATGGTTATCAGCCATATCTTATATCACCTGAAAAGGGTCTGCGATCTTTAATAAAAGGTGTTTTGGAGCTTGCGAAAGAACCTTCACGCCTTTGTGTTGATGAGGTACACAGAGTCTTGGTAGATATTGTTTCTGCAGCAGCAAATGCTACTCCAGGTCTTGGAAGATACCCTCCTTTCAAAAGAGAGATTGTGGCCATTGCAAGTGCTGCATTGGACGGGTTTAAGAATGAAGCAAAGAAGATGGTGGTGGCGCTAGTTGATATGGAGCGAGCTTTTGTACCCCCACAACATTTCATCCGTTTGGTACAAAGGAGGATGGAGCGGCAGCGCCGCGAGGAGGAGCTGAAAACACGATCCTCAAAGAAAGGACAAGATGCAGAGCAAGCCATATTAAACAGGGCAACGAGTCCTCAAACTGGTGGTCAGCAAGCTGGTGGAAGCTTGAAGTCAATGAAGGACAAACCGGGTAAGGAAGAGAAAGAAGTACAAGAGGGTTCTGGTCTGAAGACTGCAGGTCCTGAAGGAGAAATAACAGCAGGTTTTCTCTTGAAGAAAAGTGCGAAAAGTAATGAATGGAGCAGGCGGTGGTTTGTGCTGAATGAAAAGACTGGAAAGCTTGGTTACACCAAAAAGCAAGAAGAAAGACACTTTCGGGGTGTCATCACTTTGGAGGAATGCAATGTTGAAGAAGCTTCAGAGGAGGAGGAACCTCCTTCAAAGAGTTCTAAAGATAAGAAGTCCAATGGACCAGATTCTGGAAAAGGATCCAGTCTTGTGTTCAAAATCACCAGCAAAGTTCCATACAAAACTGTTTTGAAAGCCCATAGTGCTGTATTATTGAAGGCTGAGAGTGCGGCTGATAAAATTGAATGGACAAGTAAGATCCGCAATGTTATACAACCATCTAGTGGGGGCCAAAAAGGTGTATCCTCTGAAGGTGGTGGCCTTTCCATTCGACAGTCTTTTTCTGATGGTTCACTGGATACCATGGCTCGAAGACCTGCTGATCCTGAAGAAGAACTGCGGTGGATGTCTCAAGAAGTGCGCGGTTATGTTGAAGCTGTTCTGAACAGTTTAGCTGCTAATGTCCCCAAGGCAGTTGTTCTTTGCCAAGTTGAGAAAGCTAAGGAAGACCTGTTAAATCAGTTGTATAGCTCAATAAGTGGCCAAAGCGTGACGAGGATTGAGGAGCTACTTTTGGAGGACCAGAATGTAAAGCGTAGAAGGGAGCGAAACCAGAAACAGTCATCTATCCTCTTTAAACTTATACGCCAACTCAGCATTCATGATAACAGTGCCGCTGCTGCCTCTGGCTGGTCTGATGATGCTGCAGCTGAAAGTAGCCCAAGGACAGGTAGTGTGGGTGGTGACGAGTGGAGATCTGCATTTGACGCTGCTGCCAATGGGTCCACCAGCTTCGGCAGGTCTTCATCAAACGGTCACAATAGACATTACAGTGATCCAGCCCAAAATGGTGATATAAGCTCAGGCTCAAACTCCAGTAGCCGCCGCACTCCTAATCGGTTGCCGCCACCTCCACCTCAAGCTTCTTCAGGTTCCCGATATTTCTAG 2781 45.85 MEAIEELAELSESMRQAAALLADEDVDENSNPAGSSRRASTFLNVVALGNVGAGKSAVLNSLVGHPILPTGENGATRAPISIDLQRDGSLSTKSIILQIDNKSQQVSASALRHSLQDRLSKGSTGKSRDEINLKLRTSTAPPLKLIDLPGLDQRTVDESMVSEYGEHNDAILLVIVPAAQAPEISSSRALKVAKEYDSEGTRTIGVISKIDQAASEQKALAAVQALLLNQGPPRASDIPWVALIGQSVSIASAQSGSVGSENSLETAWRAESESLKSILTGAPQSKLGRIALVDALSQQIRNRMKIRLPNLLSGLQGKSQIIQDELVRLGEQMIQSPEGTRAVALELCREFEDKFLQHIATGEGAGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLVDIVSAAANATPGLGRYPPFKREIVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEELKTRSSKKGQDAEQAILNRATSPQTGGQQAGGSLKSMKDKPGKEEKEVQEGSGLKTAGPEGEITAGFLLKKSAKSNEWSRRWFVLNEKTGKLGYTKKQEERHFRGVITLEECNVEEASEEEEPPSKSSKDKKSNGPDSGKGSSLVFKITSKVPYKTVLKAHSAVLLKAESAADKIEWTSKIRNVIQPSSGGQKGVSSEGGGLSIRQSFSDGSLDTMARRPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDLLNQLYSSISGQSVTRIEELLLEDQNVKRRRERNQKQSSILFKLIRQLSIHDNSAAAASGWSDDAAAESSPRTGSVGGDEWRSAFDAAANGSTSFGRSSSNGHNRHYSDPAQNGDISSGSNSSSRRTPNRLPPPPPQASSGSRYF 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9877746 9888054 + Conep04aG0120000.1 Cone4ag1154 436132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1154 926 Pfam Dynamin family 45 209 IPR045063 -
Cone4ag1154 926 PANTHER DYNAMIN 42 825 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Cone4ag1154 926 MobiDBLite consensus disorder prediction 554 568 - -
Cone4ag1154 926 Coils Coil 798 818 - -
Cone4ag1154 926 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 68 77 IPR019762 -
Cone4ag1154 926 SMART PH_update 579 705 IPR001849 -
Cone4ag1154 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 318 IPR027417 -
Cone4ag1154 926 FunFam Dynamin-2A 335 542 - -
Cone4ag1154 926 Gene3D Dynamin, middle domain 699 812 - -
Cone4ag1154 926 Pfam Dynamin GTPase effector domain 742 822 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag1154 926 MobiDBLite consensus disorder prediction 535 549 - -
Cone4ag1154 926 Pfam PH domain 582 702 IPR001849 -
Cone4ag1154 926 Gene3D - 40 324 IPR027417 -
Cone4ag1154 926 ProSiteProfiles GED domain profile. 744 837 IPR020850 -
Cone4ag1154 926 FunFam Dynamin-2A 699 812 - -
Cone4ag1154 926 SMART dynamin_3 1 251 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag1154 926 ProSiteProfiles PH domain profile. 578 703 IPR001849 -
Cone4ag1154 926 SUPERFAMILY PH domain-like 579 703 - -
Cone4ag1154 926 PRINTS Dynamin signature 67 84 IPR022812 -
Cone4ag1154 926 PRINTS Dynamin signature 42 60 IPR022812 -
Cone4ag1154 926 PRINTS Dynamin signature 179 197 IPR022812 -
Cone4ag1154 926 PRINTS Dynamin signature 198 214 IPR022812 -
Cone4ag1154 926 MobiDBLite consensus disorder prediction 703 730 - -
Cone4ag1154 926 FunFam Dynamin-2A 571 706 - -
Cone4ag1154 926 MobiDBLite consensus disorder prediction 636 653 - -
Cone4ag1154 926 MobiDBLite consensus disorder prediction 868 908 - -
Cone4ag1154 926 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 39 309 IPR030381 GO:0005525(InterPro)
Cone4ag1154 926 MobiDBLite consensus disorder prediction 631 659 - -
Cone4ag1154 926 Gene3D Dynamin, middle domain 335 552 - -
Cone4ag1154 926 Gene3D - 577 698 IPR011993 -
Cone4ag1154 926 Pfam Dynamin central region 262 500 IPR000375 -
Cone4ag1154 926 MobiDBLite consensus disorder prediction 840 926 - -
Cone4ag1154 926 FunFam Dynamin-2B isoform A 41 324 - -
Cone4ag1154 926 MobiDBLite consensus disorder prediction 703 741 - -
Cone4ag1154 926 CDD DLP_1 45 309 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag1154 926 MobiDBLite consensus disorder prediction 535 577 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1154 K01528 - - csv:101220753 1463.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1154 Cone-Chr4:9877746 Cone7ag0433 Cone-Chr7:1939996 2.49E-59 dispersed
Cone4ag1154 Cone-Chr4:9877746 Cone7ag0974 Cone-Chr7:7550035 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69