Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1156 ATGGCAGGACGATCAAATAGCAGCACTGTATATGTTGGTAATTTAGATGAAAGGGTCACGGATAGGGTTCTGTATGATATTCTAATTCAAGCGGGCCGACTTGTAGACTTGCACATTCCTCGAGACAGAGAAACAGATAAGCATAAAGGCTATGCTTTTGCAGAATATGAAACGGAAGAAGTTGCGGAGTATGCTGTGAAGCTTTTTTCTGGCCTTGTTACTCTTTACAATCGGTCCCTGAAATTTGCAATGTCTGGGAAAGACAAGCCCTCACCAAGTAATAACAGTGGAATCACTTCCACATCAAAAGTATCTAATAAACCAAGGTCTCTCTCTGTAAAAAGTAATTATATGGATATATCTCAACACAGTACTAAATTATCAACAGCTGGCCGGTTTGCAGCTTATTCAGCACACTATTCGGAAGGCTGA 432 40.51 MAGRSNSSTVYVGNLDERVTDRVLYDILIQAGRLVDLHIPRDRETDKHKGYAFAEYETEEVAEYAVKLFSGLVTLYNRSLKFAMSGKDKPSPSNNSGITSTSKVSNKPRSLSVKSNYMDISQHSTKLSTAGRFAAYSAHYSEG 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9893787 9896438 + Conep04aG0120200.1 Cone4ag1156 436134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1156 143 MobiDBLite consensus disorder prediction 88 110 - -
Cone4ag1156 143 SMART rrm1_1 9 83 IPR000504 GO:0003723(InterPro)
Cone4ag1156 143 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 87 IPR000504 GO:0003723(InterPro)
Cone4ag1156 143 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 137 IPR052285 -
Cone4ag1156 143 Gene3D - 2 96 IPR012677 -
Cone4ag1156 143 Pfam RNA recognition motif 10 80 IPR000504 GO:0003723(InterPro)
Cone4ag1156 143 SUPERFAMILY RNA-binding domain, RBD 6 90 IPR035979 GO:0003676(InterPro)
Cone4ag1156 143 CDD RRM1_SF3B4 10 82 IPR034158 -
Cone4ag1156 143 MobiDBLite consensus disorder prediction 83 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1156 K12831 - - gmx:100784532 169.088
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1156 Cone-Chr4:9893787 Cone7ag0972 Cone-Chr7:7533833 4.82E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1709 Blo01g01680 Blo12g00814 . Bda03g00358 Bpe02g00261 . Bma04g00335 Bma01g02447 . . Cma01g00868 Cma09g01300 . . . Cpe06g00980 . . . . . . . . Cla08g00119 Cam08g0117 Cec08g0139 Cco08g0177 Clacu08g0128 Cmu08g0122 Cre08g0108 Cone4ag1156 . . . . . . Cme09g00085 . . . . . . . . . Cmo01g00911 . . . . Car09g01111 . Cpe02g00991 . . . . . . . . . . . . . . Lsi08g00104 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002883 1 6 2 2 1 2 1 1 2 2 2 1 2 2 1 2 2 2 2 2 2 1 1 1 1 1 1 3 3 1 53