Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1158 ATGTCTTTGAATATCAAAACCCTAACGCAGGCCCTAGCCAAGACCGCGGCGGTTATTGAAAAAACCGTTCAGACAACTGTACAGGAGGTGACCGGGCCCAAGGCCCTCATGGATTACGAGCTCCTCGACCAGATCGGCTCAGCAGGGCCAGGTCTTGCTTGGAAATTGTATTCAGCCAGGGCGGCGCGTGAATCTACGCGCGCTCAGCAGTACCCGACGGTATGCGTTTGGGTTTTGGATAAGAAGGCTCTGTCGGAGGCTCGTGTCCGAGCTGGTCTGTCTAAAGCGGCAGAGGATGCTTTCTTTGATTTGATTCGAGCTGATGCAGGGAGATTGTTGAGGTTGAGGCATCCAGGCGTGTTGCATGTAGTGCAGGCTCTGGATGAGAACAAGAATGCTATGGCGATGGTGACAGAGCCGTTGTTCGCTTCAGTGGCTAATGTGCTTGGGAATGTGGATAATATTGCTAAGGTGCCCAAGGAGCTCAACGGCACGGAGATGGGCTTGTTAGAGGTGAAGCACGGTCTACTCCAGATAGCAGAATCCTTGGATTTTCTCCATAACAATGCACGCCTTATTCATCGGGCTATTTCACCTGAGAATATCCTTATTACTTCAAATGGAGCTTGGAAGCTTGCTGGGTTTGGGTTTACAATTGCAGTAGATCAGGCCTCAACTGATACACAGGGTTTCCATTATGCTGAGTATGATGTTGAGGATTCTGTACTGCCCCTCCAGCCATCCTTGAATTACACTGCTCCTGAATTGGTTCGTAGCAAATCATCTGCTGCCGGATGCTCTTCTGATATTTTCAGTTTCGGATGCCTCGCTTACCATTTGATTGCTAGAAAGCCTCTGTTTGACTGCCACAACAACCTCCGAATGTACATGAATTCATTAAATTACTTATCCAATGAGGCATTTTCCACTATCCCAATGGAGTTAGTTCCAGACTTGCAAAGAATGCTTTCAACAAATGACTCTTTCCGGCCAACCGCAATGGACTTCACTGGTTCAGCATTTTTCCGAGATGACACGAGGTTGCGTGCTCTTCGATTTCTTGACCACATGCTTGAAAGAGATAACATGCAAAAGTCGGAATTTTTAAAAGCTTTATTTGGAATGTGGAAAGATTTTGACTCGCGTGTATTGCGGTATAAGGTCCTCCCACCTCTTTGTGCCGAACTTCGGAATTTGGTGATGCAACCCATGATTTTGCCCATGGTTCTCACAATAGCAGAGTCTCAGGATAAAAATGATTTCGAGTTATCAACACTACCAGCTCTTATTCCTGCCTTGAGCACTGCTAGCGGTGACACACTCTTGCTACTTGTGAAGCACGCTGAGCTCATAACCAGCAAGACTAGCCAGGAGCAGTTGATTTCACATGTCCTTCCTTTGATTCTTCGAGCTTATGATGATAGTGATGTTCGTATACAAGAGGAAGTTTTGAGAAAATCTCCCTCTCTTGCTAAGAGGCTTAATGTTCAGCTAGTGAAACAAGAAATTTTGCCTCGTGTTCATGGCCTAGCTCTTAAGACAACAGTTGCTGCGGTTAGAGTCAATGCCTTGCTTTGCTTGGCAGAATTGGTTAACACACAGGATAAACGTGCAATTCTAGATATCTTGCAAACAATTCAACGCTGTACTGCTGTTGACCGTTCTGCTCCTACCCTTATGTGCACCCTTGGGGTTGCAAACTCAATTCTCAAGCAGTATGGAGTAGAATTTGTAGCTGAGCATGTTCTTCCATTACTCATGCCTCTTCTCACTGCCCAACAATTAAATGTTCAGCAGTTCGCAAAATATATGTTCTTTGTCAAGGACATTCTCAGGAAAATTGAGGAAAAGCGGGGAGTTTCTGTGACTGATTCTGGAGTTCCGGAGCAAAATTCATCTCTTGTTTCTAATGGGCTTCAGCACCAACCAACAATCAAACCTAATGAAACCATCCCTTACACAACCCAGAGATCTGCATGGGATGAAGATTGGGGTCCCACCACCAAGGGACCTCCTGCTTCCTTGCAAAAGTCTAATAATAGTAGTATTCCCTTCACTCCTGGTCTAGTGAACCAATCAATTCAAGTAACCTCAAAACAGCCACAGTCCATATCTAATCATGAAACAGCTGCATCATGCACCCCTGTTGACATAGAGTGGCCTCCTCGATCAGTCTTGACTGGGCTTTCAGCCCAATTAGGTGATGCTGAGAAGCAATCAGCCACAGGAGCAGTTTCCAGTTCAAGCTTTGATAGTGTAGACCCTTTTGCTGATTGGCCTCCGAGACCTAGTGGCTTACTTAGTTCTTCCGGAATCTCAAACAATGGCATACCTGGACTGTCTGCAAACAATTATGGATCTGGTCCACTCTTGAGTACGCCGAACAGTATGGACTTCCAAATGAACAGCAATATGAGCTGGGCCCCAAGTAACCTAAATACCACTGAACCGATGAAACAGAGTCAAGGAAATTCAAATTTTAACGTGGGTAGTAGTTTCAATTCGCAAAACACGATTGGGTTTTTGAAACAAAATCAAGGATTTTCTCAATCCCCCAACAAGGCGACAGATCTTGGATCCATATTTGCAACCAGTAAGAATGATCAGACTGCACCACGACTTGCTCCCCCACCCTCAACTGCTGTTGGCAGAGGCAGAGGAAGAGGGAAAGGGGTCTCGGCATCCTCTCGTTCTAGTCAAACCAAATCATCATCATCAGCTGGACAGCCTCCACTTCTAGATTTGCTATGA 2751 45.8 MSLNIKTLTQALAKTAAVIEKTVQTTVQEVTGPKALMDYELLDQIGSAGPGLAWKLYSARAARESTRAQQYPTVCVWVLDKKALSEARVRAGLSKAAEDAFFDLIRADAGRLLRLRHPGVLHVVQALDENKNAMAMVTEPLFASVANVLGNVDNIAKVPKELNGTEMGLLEVKHGLLQIAESLDFLHNNARLIHRAISPENILITSNGAWKLAGFGFTIAVDQASTDTQGFHYAEYDVEDSVLPLQPSLNYTAPELVRSKSSAAGCSSDIFSFGCLAYHLIARKPLFDCHNNLRMYMNSLNYLSNEAFSTIPMELVPDLQRMLSTNDSFRPTAMDFTGSAFFRDDTRLRALRFLDHMLERDNMQKSEFLKALFGMWKDFDSRVLRYKVLPPLCAELRNLVMQPMILPMVLTIAESQDKNDFELSTLPALIPALSTASGDTLLLLVKHAELITSKTSQEQLISHVLPLILRAYDDSDVRIQEEVLRKSPSLAKRLNVQLVKQEILPRVHGLALKTTVAAVRVNALLCLAELVNTQDKRAILDILQTIQRCTAVDRSAPTLMCTLGVANSILKQYGVEFVAEHVLPLLMPLLTAQQLNVQQFAKYMFFVKDILRKIEEKRGVSVTDSGVPEQNSSLVSNGLQHQPTIKPNETIPYTTQRSAWDEDWGPTTKGPPASLQKSNNSSIPFTPGLVNQSIQVTSKQPQSISNHETAASCTPVDIEWPPRSVLTGLSAQLGDAEKQSATGAVSSSSFDSVDPFADWPPRPSGLLSSSGISNNGIPGLSANNYGSGPLLSTPNSMDFQMNSNMSWAPSNLNTTEPMKQSQGNSNFNVGSSFNSQNTIGFLKQNQGFSQSPNKATDLGSIFATSKNDQTAPRLAPPPSTAVGRGRGRGKGVSASSRSSQTKSSSSAGQPPLLDLL 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9911720 9920203 - Conep04aG0120400.1 Cone4ag1158 436136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1158 916 SMART serkin_6 39 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1158 916 Gene3D - 346 618 IPR011989 -
Cone4ag1158 916 MobiDBLite consensus disorder prediction 621 681 - -
Cone4ag1158 916 Pfam Protein kinase domain 109 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1158 916 Gene3D Phosphorylase Kinase; domain 1 34 139 - -
Cone4ag1158 916 SUPERFAMILY ARM repeat 343 604 IPR016024 -
Cone4ag1158 916 CDD PK_SCY1_like 45 344 - -
Cone4ag1158 916 MobiDBLite consensus disorder prediction 892 910 - -
Cone4ag1158 916 MobiDBLite consensus disorder prediction 806 830 - -
Cone4ag1158 916 ProSiteProfiles Protein kinase domain profile. 39 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1158 916 MobiDBLite consensus disorder prediction 864 916 - -
Cone4ag1158 916 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 13 910 IPR051177 -
Cone4ag1158 916 Gene3D Transferase(Phosphotransferase) domain 1 151 345 - -
Cone4ag1158 916 SUPERFAMILY Protein kinase-like (PK-like) 37 345 IPR011009 -
Cone4ag1158 916 MobiDBLite consensus disorder prediction 624 662 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1158 K17541 - - rcu:8277190 1278.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1158 Cone-Chr4:9911720 Cone7ag0970 Cone-Chr7:7514562 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1693 Blo01g01678 . . . Bpe02g00263 . . Bma01g02446 . . Cma01g00863 Cma09g01302 Car01g00792 . . Cpe06g00982 . . . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 Cone4ag1158 . . . . . . Cme09g00077 . . Bda11g00925 . . . . . . Cmo01g00908 . . . . Car09g01114 . Cpe02g00993 . . . . . . . . . . . . . . Lsi08g00097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006310 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 3 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82772 PF01222 ERG4_ERG24 7.60E-87 CL0115 Cone PK