Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1168 | ATGACTCATACTACTAGTTCATGTTACAGTACTACCCATGGTCCGGCCACTTCTAGCTATAGAGGAGTCCGGAAGAGAAAATGGGGAAAATGGGTATCCGAAATCCGAGAACCTGGGACGAAAACCCGAATCTGGCTAGGCAGCTTCGAGACTCCTGAGATGGCTGCCGTGGCCTATGATGTGGCGGCTCTACATTTCCGCGGAAGAGATGCTCATTTAAATTTCCCGGAAATGGTCAATAGCCTTCCTAATCCGGCTAGTTCGAATGCGGAAGATATACGCATGGCGGCCCATGAGGCGGCCATGAGGCTATGCGGCGCACCATCACATGAAGAGGCGACTCATGATCAGCTTGCTGGCTCCAGCAGCTCGAACATGGCGGGACCAGTGACGGTTAGGCTATCACCGAGCCAGATTCAGGCGATTAACGAGTCCCCCTTGGACTCACCAAAGATGTGGATGCAAATGTCCGAGTCGTTTATGGTAGAACAAAGTATGATGTTCAACGATAACATTGCCATTGAAGATCATAATGAGTATTATTGGGAGGATATGCAACAAGATTCACTTTGGGATCCGTAA | 582 | 49.48 | MTHTTSSCYSTTHGPATSSYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAVAYDVAALHFRGRDAHLNFPEMVNSLPNPASSNAEDIRMAAHEAAMRLCGAPSHEEATHDQLAGSSSSNMAGPVTVRLSPSQIQAINESPLDSPKMWMQMSESFMVEQSMMFNDNIAIEDHNEYYWEDMQQDSLWDP | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 9947641 | 9948222 | - | Conep04aG0121400.1 | Cone4ag1168 | 436146 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1168 | 193 | ProSiteProfiles | AP2/ERF domain profile. | 19 | 76 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1168 | 193 | SUPERFAMILY | DNA-binding domain | 18 | 77 | IPR016177 | GO:0003677(InterPro) | |
Cone4ag1168 | 193 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cone4ag1168 | 193 | PRINTS | Ethylene responsive element binding protein signature | 20 | 31 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1168 | 193 | PRINTS | Ethylene responsive element binding protein signature | 42 | 58 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1168 | 193 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cone4ag1168 | 193 | Pfam | AP2 domain | 19 | 68 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1168 | 193 | CDD | AP2 | 18 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1168 | 193 | FunFam | Ethylene-responsive transcription factor 2 | 18 | 77 | - | - | |
Cone4ag1168 | 193 | Gene3D | AP2/ERF domain | 19 | 78 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1168 | 193 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 17 | 162 | IPR051032 | - | |
Cone4ag1168 | 193 | SMART | rav1_2 | 19 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag0855 | Cone-Chr17:6783221 | Cone4ag1168 | Cone-Chr4:9947641 | 6.70E-24 | dispersed | |
Cone20ag0201 | Cone-Chr20:868165 | Cone4ag1168 | Cone-Chr4:9947641 | 4.75E-24 | dispersed | |
Cone4ag1168 | Cone-Chr4:9947641 | Cone7ag0709 | Cone-Chr7:4093784 | 9.14E-35 | dispersed | |
Cone4ag1168 | Cone-Chr4:9947641 | Cone7ag0962 | Cone-Chr7:7465563 | 1.03E-118 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45984 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1168 | - | - | - | 0.0 |