Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1168 ATGACTCATACTACTAGTTCATGTTACAGTACTACCCATGGTCCGGCCACTTCTAGCTATAGAGGAGTCCGGAAGAGAAAATGGGGAAAATGGGTATCCGAAATCCGAGAACCTGGGACGAAAACCCGAATCTGGCTAGGCAGCTTCGAGACTCCTGAGATGGCTGCCGTGGCCTATGATGTGGCGGCTCTACATTTCCGCGGAAGAGATGCTCATTTAAATTTCCCGGAAATGGTCAATAGCCTTCCTAATCCGGCTAGTTCGAATGCGGAAGATATACGCATGGCGGCCCATGAGGCGGCCATGAGGCTATGCGGCGCACCATCACATGAAGAGGCGACTCATGATCAGCTTGCTGGCTCCAGCAGCTCGAACATGGCGGGACCAGTGACGGTTAGGCTATCACCGAGCCAGATTCAGGCGATTAACGAGTCCCCCTTGGACTCACCAAAGATGTGGATGCAAATGTCCGAGTCGTTTATGGTAGAACAAAGTATGATGTTCAACGATAACATTGCCATTGAAGATCATAATGAGTATTATTGGGAGGATATGCAACAAGATTCACTTTGGGATCCGTAA 582 49.48 MTHTTSSCYSTTHGPATSSYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAVAYDVAALHFRGRDAHLNFPEMVNSLPNPASSNAEDIRMAAHEAAMRLCGAPSHEEATHDQLAGSSSSNMAGPVTVRLSPSQIQAINESPLDSPKMWMQMSESFMVEQSMMFNDNIAIEDHNEYYWEDMQQDSLWDP 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9947641 9948222 - Conep04aG0121400.1 Cone4ag1168 436146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1168 193 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1168 193 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677(InterPro)
Cone4ag1168 193 MobiDBLite consensus disorder prediction 1 20 - -
Cone4ag1168 193 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1168 193 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1168 193 MobiDBLite consensus disorder prediction 1 18 - -
Cone4ag1168 193 Pfam AP2 domain 19 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1168 193 CDD AP2 18 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1168 193 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Cone4ag1168 193 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1168 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 162 IPR051032 -
Cone4ag1168 193 SMART rav1_2 19 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0855 Cone-Chr17:6783221 Cone4ag1168 Cone-Chr4:9947641 6.70E-24 dispersed
Cone20ag0201 Cone-Chr20:868165 Cone4ag1168 Cone-Chr4:9947641 4.75E-24 dispersed
Cone4ag1168 Cone-Chr4:9947641 Cone7ag0709 Cone-Chr7:4093784 9.14E-35 dispersed
Cone4ag1168 Cone-Chr4:9947641 Cone7ag0962 Cone-Chr7:7465563 1.03E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45984 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1168 - - - 0.0