Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1171 ATGGGCTGCATCTGCTCAAAAGAGTCGCCAGAACCAGAGAAAAGCAATGACAACAGCGTTTGGGACAATGAGTTCAACAAGTCTTCAGTTCAATTGGTTGCCCCTGCTCCTTCTTTCACAGAAGATTACAAGGTAGAGGTTAGAGGTGATGCCTCAGTTCTTCCTTTATCAAGGCAGGCTTCTCAGACCAATGGCAATTATTCTGTTCATCAAAGCAAGCAAAATTTGCAAAATCTACTCTTAAAGGATATTGAAGAAGAGAATAATAAGAAGAGGATATCTCGTTTGTCCAATGCGAGTGAAGGTGACCTGTCGGGTTGGCCCTCCTGGTTAGCTTCAGTTGCCGGAGATGTCATCCAAGGGTGGGTCCCTCGTCAGGCTGACTCATTTGAGAAGTTAGGCAAAATTGGACAGGGAACTTACAGCAGTGTGTACAAGGCTCGAGACCTTGTAACTGGTAAAATTGTGGCGTTGAAGAAGGTTAGATTTGTAAATATGGATCCGGAAAGTGTCCGGTTCATGGCTAGAGAAATCTACATTTTGCGTAAACTTGATCATCCGAACATAATAAAGCTCGAGGGTTTAGTCACTTCAAGAGCATCTTCCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACCTGGCCGGCCTCGCAGCAGCTCCTACCGTCAAGTTTACAGAATCTCAGATCAAATGCTATATGCAACAGTTGCTACATGGGCTAGAGCACTGCCATTCACTGGGCGTGCTGCATAGAGACATTAAGGGGTCAAATCTTCTGATTGATAATAATGGGGTACTTAAGATTGGGGACTTTGGATTAGCTACTCTTTTTGAGCCTGATCAAAACCAGCCATTAACAAGCAGGGTTGTGACTCTATGGTATAGAGCACCTGAGCTCTTGCTTGGTGCTACTGAGTATGGAGCTGCTATCGATCTTTGGAGCTGTGGTTGCATTCTTGCTGAGTTGTTTGCTGGAAAGCCGATAATGCCTGGAAGAACAGAGGTAGAACAAATGCATAAGATATTCAAGTTGTGTGGTTCACCCCCGGAAGATAGCTGGCAAAGAACTAGATTACCTTTAGCAACTAGTTTCAAACCGCAACAACCCTACAGGAGCCGTCTAGCCGATACGTTCAAAAACATTTCTCCTTCTGCTTTTGATCTTATAGAAAGACTCCTTTCGATTCAACCCGAGGATAGAGGATCAGCTAGCTCCGCACTTGGAAGTAAGTTTTTCAAAACTGAACCTCTCCCTTGTAACCCAAAGAGTCTGCCTCAATATCCTCCGAGCAAGGAGTTTGATGCCAAGCTTCGAGATGAGGAAGCAAAAAGGAAAAAAGCGGATGCAGTTAGGGGCCGTGGTCCGGAATCAGTTAGAAGAGGCTCAAGAGACACTAAGCTGGTAAGAACACCAGAATACAATACAGCAGGAGATATCCGGTTGCAGGGACAAGCAAATCCTAAGACAGTTAGTCATAAACTGAATCCTCAAGAGGATGGTGGGTCCGGGTTTGCTATGTTGGCCCCAAAAGGAGCTATGAGAAATGGATACACACATTCTACTTCCATGATACACCCTTCAGCAGTAGGATCGACTGGGACTAAACCATCCGGACCCCCTAGAACAAATGAAGAGTTAAGGGCACCAAGTTCTATGAAGCCTCAACCTCTATCGGACCTGTCCGTCCCTTCTATAAAGAAAGATGATAGAGATTCGGTCCGAGGTTCTGGACCGGGTTATAGAAGGAATAATAGGATCCATCACTCAGGACCATTGGTTCCGCCTGGAAGTAACATGGAAGACATGCTTAAGGAGCATGAGAGACTGATGCAACAGGCTTTTCGGAAAGCTCGTTTGGACAAGCACCAACAGAAACTAGGCTAG 1890 45.29 MGCICSKESPEPEKSNDNSVWDNEFNKSSVQLVAPAPSFTEDYKVEVRGDASVLPLSRQASQTNGNYSVHQSKQNLQNLLLKDIEEENNKKRISRLSNASEGDLSGWPSWLASVAGDVIQGWVPRQADSFEKLGKIGQGTYSSVYKARDLVTGKIVALKKVRFVNMDPESVRFMAREIYILRKLDHPNIIKLEGLVTSRASSSLYLVFEYMEHDLAGLAAAPTVKFTESQIKCYMQQLLHGLEHCHSLGVLHRDIKGSNLLIDNNGVLKIGDFGLATLFEPDQNQPLTSRVVTLWYRAPELLLGATEYGAAIDLWSCGCILAELFAGKPIMPGRTEVEQMHKIFKLCGSPPEDSWQRTRLPLATSFKPQQPYRSRLADTFKNISPSAFDLIERLLSIQPEDRGSASSALGSKFFKTEPLPCNPKSLPQYPPSKEFDAKLRDEEAKRKKADAVRGRGPESVRRGSRDTKLVRTPEYNTAGDIRLQGQANPKTVSHKLNPQEDGGSGFAMLAPKGAMRNGYTHSTSMIHPSAVGSTGTKPSGPPRTNEELRAPSSMKPQPLSDLSVPSIKKDDRDSVRGSGPGYRRNNRIHHSGPLVPPGSNMEDMLKEHERLMQQAFRKARLDKHQQKLG 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9962722 9965265 + Conep04aG0121700.1 Cone4ag1171 436149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1171 629 MobiDBLite consensus disorder prediction 442 466 - -
Cone4ag1171 629 Gene3D Phosphorylase Kinase; domain 1 117 212 - -
Cone4ag1171 629 Gene3D Transferase(Phosphotransferase) domain 1 213 454 - -
Cone4ag1171 629 MobiDBLite consensus disorder prediction 482 498 - -
Cone4ag1171 629 FunFam probable serine/threonine-protein kinase At1g54610 213 453 - -
Cone4ag1171 629 SMART serkin_6 130 414 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1171 629 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524(InterPro)
Cone4ag1171 629 Pfam Protein kinase domain 130 414 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1171 629 MobiDBLite consensus disorder prediction 517 541 - -
Cone4ag1171 629 SUPERFAMILY Protein kinase-like (PK-like) 123 421 IPR011009 -
Cone4ag1171 629 ProSiteProfiles Protein kinase domain profile. 130 414 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1171 629 CDD STKc_CDK9_like 130 414 - -
Cone4ag1171 629 FunFam probable serine/threonine-protein kinase At1g54610 117 212 - -
Cone4ag1171 629 PANTHER CELL DIVISION PROTEIN KINASE 129 414 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone4ag1171 629 MobiDBLite consensus disorder prediction 1 22 - -
Cone4ag1171 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1171 629 MobiDBLite consensus disorder prediction 482 602 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1171 Cone-Chr4:9962722 Cone9ag0171 Cone-Chr9:760275 3.71E-210 dispersed
Cone4ag1171 Cone-Chr4:9962722 Cone7ag0959 Cone-Chr7:7453099 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82773 PF00389 2-Hacid_dh 1.10E-35 CL0325 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1171 K08819 - csv:101208709 817.379