Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1183 ATGGGTGGACCAGCAAATTCAATTGATGATGATTGGGAGCTTACTTCCCCGTCCAATGGGGTCCGAACGCTCGTGTTAGTCGGGCGTACTGGGAACGGAAAAAGCGCAACAGGAAATAGCATTCTTGGAAGGAGGGCCTTTAAATCTAGGGCAAGCTCAGCTGGAGTTACTAGCACTTGTGAGTTGCAGAGAACTGTACTGAGAGATGGTCAAATTATCAATGTGATTGATACCCCGGGATTGTTCGACTTTTCTGCTGGGTCTGAATTTGTTGGCAAAGAAATTGTCAAGTGTATTGATCTGGCCAAGGATGGGATTCATGCTGTTCTTGTAGTCTTTTCAGTCAGGACCCGATTTTCTCAGGAAGAAGAAGCTTCCATTCGTAGCTTGCAGACCTTGTTTGGAAGCAAAATCATGGATTACATGATTGTAATCTTCACTGGGGGAGATGAACTTGAAGACAATGATGAGACACTTGAAGATTATTTGGGTCGTGATTGTCCTGAACCCTTGAAGGAACTCCTGGCTTTGTGTAATCACCGTTGTGTGCTTTTGGATAACAAGACTAAGGATGAGTTCAAGAAGGCAGAACAAGCCCAACAGCTTCTCTCCCTTGTGAACATTGTCATAGCAGGAAATGGTGGGCAACCCTTTACCGATGACTTATTTGAAGAGCTGAAGGAGGGAGCCATGAAGCTTCGAGGTCAACAAGAAGAGGTTGATTCCTTGAAGGGTTACACTAGAAGTGAAATTATGGAGTTTAAGGAGCAGATGCAACGTTCTTATGCTGAACAGCTTCAACGAATTACAGAGATGGTGGAGTCCAAGCTTAGAGACACAACAACAAAGCTTGAACAACAATTAGCTGAAGAACATGCAGCAAGACTTACGCTGGAAGAGAATGCACAGAAAGCTCAAAAGGCATCGAGTGATGAAATCCGCAAGCTCCGAGAGAATCTGGAAAGAGCAGAGGAAGAGCTCCGCAAGCATGGCGAGGCTGGTCGGTGTGCCATTCTCTGA 1020 45.39 MGGPANSIDDDWELTSPSNGVRTLVLVGRTGNGKSATGNSILGRRAFKSRASSAGVTSTCELQRTVLRDGQIINVIDTPGLFDFSAGSEFVGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEASIRSLQTLFGSKIMDYMIVIFTGGDELEDNDETLEDYLGRDCPEPLKELLALCNHRCVLLDNKTKDEFKKAEQAQQLLSLVNIVIAGNGGQPFTDDLFEELKEGAMKLRGQQEEVDSLKGYTRSEIMEFKEQMQRSYAEQLQRITEMVESKLRDTTTKLEQQLAEEHAARLTLEENAQKAQKASSDEIRKLRENLERAEEELRKHGEAGRCAIL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10027601 10030136 + Conep04aG0122900.1 Cone4ag1183 436161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1183 339 CDD AIG1 22 228 - -
Cone4ag1183 339 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 22 297 IPR045058 -
Cone4ag1183 339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 195 IPR027417 -
Cone4ag1183 339 ProSiteProfiles AIG1-type G domain profile. 19 227 IPR006703 GO:0005525(InterPro)
Cone4ag1183 339 Gene3D - 22 238 IPR027417 -
Cone4ag1183 339 FunFam Immune-associated nucleotide-binding protein 9 21 239 - -
Cone4ag1183 339 Pfam AIG1 family 23 235 IPR006703 GO:0005525(InterPro)
Cone4ag1183 339 Coils Coil 288 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1183 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1183 Cone-Chr4:10027601 Cone7ag0947 Cone-Chr7:7372504 3.12E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1637 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1183 Cone7ag0947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000694 1 6 1 4 1 4 1 3 4 4 3 4 1 4 4 1 5 2 1 4 5 2 3 4 3 4 2 6 4 1 92