Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1197 ATGGAGAAACTCCCACTTCTATCCCTCCCTTTCGTTGCAGCCTTTCTACTTCTTTTCCCTCCTTGTACTTGCATTGTTGCTCAGATGACGGAGATGGAAGCATTGCTTCAGTTCAAAAACCAGCTCGAAGACCCCATGAACTTCCTCCATTCTTGGAACAATTCCAACAGTCCATGTAATTTCTCGGGCGTTACTTGCAACAGGGGTACTGGAAAAGTTTCCGGAATATCGCTCGATAATAAGGCCCTTTCCGGTAAGATTTCACCTTCCATTTCTGTCCTTGAATATCTTACTACACTTTCCTTGCCCACAAACAACATTTCCGGCGAGCTTCCGGTCCAATTGACCGGTTGCAGAAATCTTAAGGTGTTGAATCTTACTGGGAATCAATTGGTGGGGCCCATACCTGATCTATCTGAGCTGGTAAATCTCGAGATTCTCGATTTATCGCTCAACTATTTTAACGGTGACTTTCCAACTTGGGTTGGGAATCTAATCGGATTGGTTTCTTTAGGACTAGGAATGAATGAATATAAGGAGGGGGAAATTCCGGAAAGTCTTGGAAATTTAAAAAACTTGACATGGTTGTATTTGGCTGATTCACATTTGAGAGGTGAGATTCCGGAATCTATTTTCGATATAGAGGCCTTGGAGACATTGGATCTTTCCAGAAATAGAATCTCTGGGAAACTTTCTGGTTCGATATCAAAGCTGCGGAATCTGCGGAAGATCGAACTTTTCGCAAACAATTTGACCGGAGAAATCCCACCAGGTGTTGCAAATCTCACCCTTCTGCAAGAATTTGATATTTCTTCTAACAAGATGTATGGGAAGTTACCTCAAGTGATAGGAAATCTGGAAAATTTAGTGGTTTTTCAGCTGTATGAAAACAACTTTTCCGGAGAGATCCCTTCCGGTTTCGGAAATATGGAGCATCTGATCGCTTTCTCAATCTACAGAAACAGTTTTTCAGGAAATTTTCCGCCAACTTTTGGCAGGTTCTCACCCTTGGTTATTATTGACATATCAGAGAATCAATTTTCCGGGCGTTTTCCGCAGTTCTTATGCGAGAGTAGAAAGTTGCAGTTCTTGCTTGCATTGGACAATAAATTCTCAGGAGAGTTTCCGGATTCCTTATCGGACTGTAAATCTCTGATAAGGTTCAGAATCAATAACAACCAGTTTTTCGGAAAAATACCAGATGCTCTTTGGGCCCTGCCTAATGCAAAAATAATCGATTTTAGTGATAATGAAATCAGTGGCGGTATTAACCCGAGTATCGGATTTTCTACCAGCTTGACCCAGTTGGTTTTACTGAACAATAGATTCTCGGGCGAGATTCCATCTGAGCTCGGAAAGTTAACAAGCTTGGGGAGGATCCATTTGGGTAATAACAACTTCTCGGGCGAGATTCCTTCTCAAATCAGTGCCTTGACTCAATTATCATCTTTGCAATTGGAAGATAATTCTTTAACCGGATCGATTCCGTCAGAAATTGGAGATTGTGTAAGGCTGGTTGACTTGAATCTCGCAGGGAATGCTCTGACCGGAAACATTCCAAAATCACTTTCATTCTTAGGGTCTTTGAATTCTCTAAACCTTTCGCGAAACAAACTCGAAGGTTCAATTCCGGAGAATCTAAAGAAAATGAAGTTAAGTTCTGTTGATTTGTCGAAAAACCAGCTGTCAGGAGTAGTTCCTTTTGATCTCCTAACAATGGGTGGAGACAGTGCCTTTGTAGAAAACAAGGGACTCTGCATTGATCTTAATCATCATTCCCCCGTAAATTCTAGCTTGAGTGGCTGTAGTAAACATCGTGGCCAGAAGGGTTTACGTAAACTGGTTTTGTTCTCTGTAATGTCATCTGCCTTGGTTTTTGTCTTGGCCGGGTTATTGCTTGTTAATTACAAGAACTTCAAGCACCGCGAAACCGACAAATTAGAGACCGGGGTTGAGGAAGAAGAGAAAGAGGTAAAACCAAAGTGGAAAGTTGCATCATTTTACCAAGTACAATTCGACACAGATGAAATATGCAACTTAAAGGAAGAGAATTTGATTGGAAGCGGAGGAACGGGAAGAGTTTACCGTTTAGATTTGAAGAAAAGTGGTGTAACAGTAGCCGTTAAGAAGCTATGGAAAGGAGATTCTGCCAAGGTTCTAGCTTCTGAAATGGAGATCATGGGGAAGATTAGACACAAGAATATACTAAAGCTTTATGGCAGTTTAATCAAAGGAGAGTCTAGTTATCTTATGTTTGAGTACATGTCGAACGGGAATCTATTTCAAGTGCTTGAAAGACGGATCAAGGGCGGACGGTCTGAGTTGGATTGGTATCAGAGGTATAAGATTGCTTTGGGCATAGCAAGGGCAATTGCATACTTACACCAAGATTGTTCTCCGCCTATTATCCACCGTGATATAAAATCGACCAACATACTCCTTGATGAAGATTATGAAGCGAAAATCGCCGATTTTGGGGTTGCGAAAGTTGCAGATAAGTCTCAGAATTTTTCCGAGCATAGCTCTTTTGCTGGTACTCATGGTTACATTGCACCTGAGCTGGCCTATTCGGCTAAGGTGAATGAGAAAAGCGATGTGTATAGTTTTGGTGTAGTTTTACTGGAACTGATTACGGGTAGAAGACCAATTGAAGATGAATATGGGGAAGGGAAAGACATTGTTTATTGGGTCTCTACGCATCTAGACGACAGGGAAAGTGTCGCGAAGGTTCTTGATGGGAGCGTTGTTTCTGACTCGGTTCGAGTTGATATGATTAAGGTCCTGAAGATTGCTATTCTTTGCACGACAAAGCTGCCTTCTCTACGTCCCAGTATGAGAGAGGTCGTCAAGATGGTAGTCGATGCCGATCCTTGCAATTTCCGGTTGGTCAAAAGTAACATTTCCGACACGAAAAGTGGAGAGAACTGA 2928 41.91 MEKLPLLSLPFVAAFLLLFPPCTCIVAQMTEMEALLQFKNQLEDPMNFLHSWNNSNSPCNFSGVTCNRGTGKVSGISLDNKALSGKISPSISVLEYLTTLSLPTNNISGELPVQLTGCRNLKVLNLTGNQLVGPIPDLSELVNLEILDLSLNYFNGDFPTWVGNLIGLVSLGLGMNEYKEGEIPESLGNLKNLTWLYLADSHLRGEIPESIFDIEALETLDLSRNRISGKLSGSISKLRNLRKIELFANNLTGEIPPGVANLTLLQEFDISSNKMYGKLPQVIGNLENLVVFQLYENNFSGEIPSGFGNMEHLIAFSIYRNSFSGNFPPTFGRFSPLVIIDISENQFSGRFPQFLCESRKLQFLLALDNKFSGEFPDSLSDCKSLIRFRINNNQFFGKIPDALWALPNAKIIDFSDNEISGGINPSIGFSTSLTQLVLLNNRFSGEIPSELGKLTSLGRIHLGNNNFSGEIPSQISALTQLSSLQLEDNSLTGSIPSEIGDCVRLVDLNLAGNALTGNIPKSLSFLGSLNSLNLSRNKLEGSIPENLKKMKLSSVDLSKNQLSGVVPFDLLTMGGDSAFVENKGLCIDLNHHSPVNSSLSGCSKHRGQKGLRKLVLFSVMSSALVFVLAGLLLVNYKNFKHRETDKLETGVEEEEKEVKPKWKVASFYQVQFDTDEICNLKEENLIGSGGTGRVYRLDLKKSGVTVAVKKLWKGDSAKVLASEMEIMGKIRHKNILKLYGSLIKGESSYLMFEYMSNGNLFQVLERRIKGGRSELDWYQRYKIALGIARAIAYLHQDCSPPIIHRDIKSTNILLDEDYEAKIADFGVAKVADKSQNFSEHSSFAGTHGYIAPELAYSAKVNEKSDVYSFGVVLLELITGRRPIEDEYGEGKDIVYWVSTHLDDRESVAKVLDGSVVSDSVRVDMIKVLKIAILCTTKLPSLRPSMREVVKMVVDADPCNFRLVKSNISDTKSGEN 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10087329 10091653 + Conep04aG0124300.1 Cone4ag1197 436175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1197 975 ProSiteProfiles Protein kinase domain profile. 680 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1197 975 SUPERFAMILY RNI-like 247 565 - -
Cone4ag1197 975 FunFam Receptor-like protein kinase HSL1 288 594 - -
Cone4ag1197 975 PRINTS Leucine-rich repeat signature 526 539 - -
Cone4ag1197 975 PRINTS Leucine-rich repeat signature 217 230 - -
Cone4ag1197 975 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 412 504 - -
Cone4ag1197 975 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 755 969 - -
Cone4ag1197 975 Gene3D Phosphorylase Kinase; domain 1 678 758 - -
Cone4ag1197 975 Pfam Protein kinase domain 682 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1197 975 SUPERFAMILY Protein kinase-like (PK-like) 671 952 IPR011009 -
Cone4ag1197 975 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1197 975 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 159 255 - -
Cone4ag1197 975 Pfam Leucine Rich Repeat 481 502 IPR001611 GO:0005515(InterPro)
Cone4ag1197 975 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515(InterPro)
Cone4ag1197 975 Pfam Leucine Rich Repeat 432 454 IPR001611 GO:0005515(InterPro)
Cone4ag1197 975 Pfam Leucine Rich Repeat 120 137 IPR001611 GO:0005515(InterPro)
Cone4ag1197 975 Pfam Leucine Rich Repeat 528 550 IPR001611 GO:0005515(InterPro)
Cone4ag1197 975 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515(InterPro)
Cone4ag1197 975 FunFam Leucine-rich receptor-like protein kinase family protein 670 754 - -
Cone4ag1197 975 ProSitePatterns Protein kinases ATP-binding region signature. 686 710 IPR017441 GO:0005524(InterPro)
Cone4ag1197 975 FunFam Leucine-rich repeat receptor-like kinase 30 145 - -
Cone4ag1197 975 Gene3D Ribonuclease Inhibitor 312 594 IPR032675 -
Cone4ag1197 975 Pfam Leucine rich repeat 192 251 IPR001611 GO:0005515(InterPro)
Cone4ag1197 975 SUPERFAMILY L domain-like 52 304 - -
Cone4ag1197 975 Gene3D Transferase(Phosphotransferase) domain 1 759 963 - -
Cone4ag1197 975 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515(InterPro)
Cone4ag1197 975 Gene3D Ribonuclease Inhibitor 28 308 IPR032675 -
Cone4ag1197 975 SMART serkin_6 680 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1197 975 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Cone4ag1197 975 SMART LRR_typ_2 190 214 IPR003591 -
Cone4ag1197 975 SMART LRR_typ_2 286 309 IPR003591 -
Cone4ag1197 975 SMART LRR_typ_2 478 502 IPR003591 -
Cone4ag1197 975 SMART LRR_typ_2 526 549 IPR003591 -
Cone4ag1197 975 SMART LRR_typ_2 238 262 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0577 Cone-Chr20:3317756 Cone4ag1197 Cone-Chr4:10087329 3.68E-17 dispersed
Cone4ag1197 Cone-Chr4:10087329 Cone7ag0877 Cone-Chr7:6792849 8.36E-85 dispersed
Cone4ag1197 Cone-Chr4:10087329 Cone7ag0930 Cone-Chr7:7273106 5.11E-298 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82774 PF01764 Lipase_3 1.70E-23 CL0028 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1197 - - - 0.0