Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1202 ATGGGTGAGAACGAAGGCAGCAGCAACAAGATCACGCGGGTTCTTTTCTGCGGTCCAGATTTTCCTTGTTCTCATAATTATACCCGTGAATACCTGCAGCAATTCGCCTCTATACAGGTTGATGTTATTCCCCTTGACGCTGTGCCAGATACCATATCCAACTATGACATTTGTGTTGTTAAGAATATGAAGTTAGATGCTAATGTTATTTCTCGCGCCAAACAGATGAAGCTTATCATGCAGTTTGGTGTTGGTATTGAAGGTGTTGATGTTAATGCTGCCACAAAGTGTGGAATCAAGGTGGCCAGAATACTGGGTGGCGTAACCGGAAATGCACTGTCCTGTGCTGAAATGGCTTTATATCTAATGCTCGGCCTTCTTCGTAAGCAAAAAGAGATGCAAATATCTGTAGATCAAAGAAGGCTTGGAGACCCGATTGGCGAAACACTCTTTGGAAAAACAGTTTTTATTATGGGATTTGGAAATATTGGTCAGGAATTAGCAAAGCGCTTGCAACCCTTTGGTGTAAGGGTAATTGCTACAAAGCGGAGTTGGGGTCCACAGAACTCTTGTCAATCTGATGGTACACAAAATGGAAGAAGTGATGATCTTATTGCTGAGAAGGGTACTCATGATGATATTCTCAAGTTCGCTAGCAAAGCCGACATTGTTGTTTGTTGTTTAAGCCAGAACAGTGAAACAATGGGCATTGTAAACGAGTCATTCATATCATCGATGAGAAAGGGTGCCCTTTTGGTAAATGTAGCTAGAGGAGGTCTTGTTAACCTCGAGGCTGTTTCTCATTACCTTGAGACAGGCCACCTGGGAGGCTTAGGCACTGATGTTGCGTGGTTTGAGCCTTTTGATCCCAGTCACCCTATTTTGAAGTACAAGAATGTTCTATTGACTCCGCATGTTGCTGGTGTAACAGAATATTCTTACAGGTCCATGGCTAAGGTTGTTGGAGATGTCGCCCTTCAGCTTCATGCCGGAGATCCTCTCACGGGTATTGAGTTCGTCAATTGA 1026 43.57 MGENEGSSNKITRVLFCGPDFPCSHNYTREYLQQFASIQVDVIPLDAVPDTISNYDICVVKNMKLDANVISRAKQMKLIMQFGVGIEGVDVNAATKCGIKVARILGGVTGNALSCAEMALYLMLGLLRKQKEMQISVDQRRLGDPIGETLFGKTVFIMGFGNIGQELAKRLQPFGVRVIATKRSWGPQNSCQSDGTQNGRSDDLIAEKGTHDDILKFASKADIVVCCLSQNSETMGIVNESFISSMRKGALLVNVARGGLVNLEAVSHYLETGHLGGLGTDVAWFEPFDPSHPILKYKNVLLTPHVAGVTEYSYRSMAKVVGDVALQLHAGDPLTGIEFVN 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10104298 10107703 + Conep04aG0124800.1 Cone4ag1202 436180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1202 341 Gene3D - 104 309 - -
Cone4ag1202 341 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 44 130 - -
Cone4ag1202 341 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 25 333 IPR006139 GO:0016616(InterPro)|GO:0051287(InterPro)
Cone4ag1202 341 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 114 308 IPR036291 -
Cone4ag1202 341 PANTHER FORMATE DEHYDROGENASE 1 9 332 - GO:0004617(PANTHER)
Cone4ag1202 341 Gene3D - 43 321 - -
Cone4ag1202 341 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 246 262 IPR029753 -
Cone4ag1202 341 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 121 307 IPR006140 GO:0051287(InterPro)
Cone4ag1202 341 CDD 2-Hacid_dh_11 13 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1202 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1202 Cone-Chr4:10104298 Cone4ag1598 Cone-Chr4:12179712 1.13E-26 dispersed
Cone4ag1202 Cone-Chr4:10104298 Cone10ag1017 Cone-Chr10:7051523 4.55E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1635 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1202 . . . . . . . . . Bda11g00940 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006309 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 1 1 37