Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1206 ATGTGGGCCGAGTATCTGATCATCGATTTGGAAACGAAAGAATCTGTTGAGATGTGGAGGAAGAAGACGATGATGGCGCCTGCGCTTGTCTTCATCTCCATCTTACTATTGTGTTGTCCATGGCGGTGCTTGGGATCTCTTATTGCAACATCGGGAACGGAGGGTAAGGTTTTGGAGCTCGACGAGTCCAATTTCGATTCCTCCATTTCTAACTTCGATTTCATCCTCGTTGATTTCTACGCTCCTTGGTGCACTCATTGCCAGCGCCTCTCCCCTCAGCTGGATATTGCTGCTCCTCTGCTTGCTATCTTGAAGCAACCCGTTTTGATAGCAAAAGTAAACGCTGATAAGTTTAAAAATCTCGCTAAAAAATACGAAATTGATGCATATCCTACTCTCAAGCTCTTCATTCGTGGCGTCCCTGAAGACTATTATGGTCCAAGAGATGCAGATTTACTTGTTCGTAATATGAAGAAGTTTGTTGCCCCTGATGTCTCCGTTCTTGAATCAGCCTCTGCCATTATCCAATTTGTTGAATCAGCTGGCCCTTTCTTTCCTATTTATATAGGTTTCGGTTTGGATGAGTCGTTGATTTCAAAATTGGCTGTGAAGTATAAGAAAAAGGCTTGGTTTTCTGTGGTGAAAGATTTCTCCGAGGATGTCAGGGAGCTGTATGATTTTGAGAAGGTTCCTGCTTTAGTATCCTTACTTCCGAGCTACGGCAATGAGAAAAGCATCTTTTATGGCCCCTTTGAAGAGGAAGCTTTGGAGGGTTTTATAAAAAGAAGTTTGCTCCCCCTTGCTCTGCCCATAAATGATGAATCTCTTCACCTTCTGAAAGACGATGAGAGAAAAATTGCACTGACAATCGTGGATGATGAGTATGATGAGAAACCAAAGAATTTGATCAAATTGGTGAAGGTCGCTGCGTCTGCAAACCCTGACTTGGTATTTGGATATGTTGGGGTAAAACAATGGGCAGATTTTGCTGATACATTTCGGGAAGACAAGACAATGCCACTACCAATGATGGTCATCTGGGATGGAGAGGACGATTATTTTTCAGTTATTGGTTCTGAAAGCATCACTGAGCAAGATCAAGCATCACAGATCACAAAATTTCTCCAAGGATATAGGGAAGGAAGGACGATACAAAAGAAAATTACGGGTGCATCGTTTCTTAACTATATATATTTAGTAATTGGCGCCGTTGTTCTGTACATCATCTTGTTTGCGGCTGTAGTACTGTTGTTTATCCGAAAATGCCGTAATGAAGAGAACGAACCATCTAGGGTTGGTACCCAGGACCAGGTGGTTACTCATGCTATCAGCTCCGGTAAAATCAAAGAACACAAAATTGGAGGGAAGGAAGATTAA 1377 42.41 MWAEYLIIDLETKESVEMWRKKTMMAPALVFISILLLCCPWRCLGSLIATSGTEGKVLELDESNFDSSISNFDFILVDFYAPWCTHCQRLSPQLDIAAPLLAILKQPVLIAKVNADKFKNLAKKYEIDAYPTLKLFIRGVPEDYYGPRDADLLVRNMKKFVAPDVSVLESASAIIQFVESAGPFFPIYIGFGLDESLISKLAVKYKKKAWFSVVKDFSEDVRELYDFEKVPALVSLLPSYGNEKSIFYGPFEEEALEGFIKRSLLPLALPINDESLHLLKDDERKIALTIVDDEYDEKPKNLIKLVKVAASANPDLVFGYVGVKQWADFADTFREDKTMPLPMMVIWDGEDDYFSVIGSESITEQDQASQITKFLQGYREGRTIQKKITGASFLNYIYLVIGAVVLYIILFAAVVLLFIRKCRNEENEPSRVGTQDQVVTHAISSGKIKEHKIGGKED 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10128697 10130765 + Conep04aG0125200.1 Cone4ag1206 436184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1206 458 FunFam Protein disulfide-isomerase 5-2 48 161 - -
Cone4ag1206 458 Pfam Thioredoxin-like domain 201 376 - -
Cone4ag1206 458 Pfam Thioredoxin 57 159 IPR013766 -
Cone4ag1206 458 SUPERFAMILY Thioredoxin-like 52 160 IPR036249 -
Cone4ag1206 458 ProSiteProfiles Thioredoxin domain profile. 38 162 IPR013766 -
Cone4ag1206 458 ProSitePatterns Thioredoxin family active site. 76 94 IPR017937 -
Cone4ag1206 458 Gene3D Glutaredoxin 49 175 - -
Cone4ag1206 458 PANTHER PROTEIN DISULFIDE ISOMERASE 53 384 - GO:0003756(PANTHER)|GO:0005783(PANTHER)|GO:0006457(PANTHER)|GO:0034976(PANTHER)
Cone4ag1206 458 PRINTS Thioredoxin family signature 83 92 - -
Cone4ag1206 458 PRINTS Thioredoxin family signature 75 83 - -
Cone4ag1206 458 PRINTS Thioredoxin family signature 126 137 - -
Cone4ag1206 458 Gene3D Glutaredoxin 254 387 - -
Cone4ag1206 458 CDD PDI_a_family 58 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1206 K09580 - - vvi:100251498 506.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0340 Cone-Chr19:2749575 Cone4ag1206 Cone-Chr4:10128697 9.05E-172 dispersed
Cone4ag1206 Cone-Chr4:10128697 Cone7ag1524 Cone-Chr7:10577119 8.39E-26 dispersed
Cone4ag1206 Cone-Chr4:10128697 Cone20ag0440 Cone-Chr20:2221356 4.51E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1206 . . . . . . . Blo17g00155 Blo18g00166 . Bda13g01447 . Bpe14g00408 . Bma02g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006012 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 38