Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1210 ATGCCCGCAGCTGGTGTTGTTGGAGACATGACTCCTCCTACTACTAATGGAGCAGGCTCGTCAGATCAACTTAGAGCTCCTCCTCGAGACCCGCGTCACCTACCTCCTTCCCCTCCTATTACACTCAACTTCATGGACATCTGCTACAAAATGAAGTCAGACAGTAGTAGTAAACACAGAGCTGGGACAACCCTTGACCGCATTTTCAACCATGTCCCCACCCACAGATCATCCTCATCTTCTACTAATACTCTTCAAGAACGTAACATCTTAAGCGGAGTCACCGGCATGGCTTTACCGGGCGAGATCCTGGCCATCCTTGGCCCGTCGGGAAGCGGAAAATCAACGCTCCTCAATGCACTGGCCGGTCGGCTCCAGCTAGGCCACAATCTCACCGGAACAATCCTCGCCAACGGGAAGAAGATAAGCAAATCCATACTCAGACGAACCGGGTTCGTCACGCAAGACGACGTGCTTTACCCCCACCTCACCGTTCACGAAACGCTGGTTTTCTGCGCGCTTCTCCGTCTGCCCAAAACGCTGTCGAAGAAAGAGAAGATCACGGTCGCTGAGTCGGTGATGTCCGAGTTAGGACTGGTCAAATGCCAGAGCACGATCATTGGCAACAGCTTCATACGCGGTGTTTCGGGCGGGGAGAGGAAGAGAGTGAGTATAGCGCATGAGATGTTGATTAATCCCAGCTTGTTGATTCTGGACGAGCCGACGTCGGGACTTGACTCGACAGCGGCTCACCGGCTAATAACTACTCTGGGGTCGTTGGCTCGTGAGAAGGGAAAGACGGTGGTGACATCGATGCACCAGCCGTCGAGCAGGGTGTTCCAGATGTTTAGCTCAGTTCTAGTCTTGTCGGAAGGGAGATGTTTGTATTTTGGAAAAGGGAGTGAAGCCATGAGCTACTTCGAGTCGGTTGGATTCTCACCAAACTTTCCCATGAATCCTGCCGATTTCTTGCTTGATCTCGCTAACGGTGTATGTCATCTTGAAAATAATAATACGAATGAAAAGGACAAACCCAACATAAGGCAAACCCTTGTCTCCTCTTACAACACCATATTAGCACCATCTGTAAAAGCAGCCTGCATGGAGATTACTACTGCTACTGCTAACCAAACTAATCAACAAATCAGCAATTTCATTGAAACTCATTCAAGTACTAGATCATCGTCATCGGATCGTAGAGACTATTTTAACCCTAGAATCACCCTCTCCACTTGGCTCAACCAATTCACAATACTCCTCCAAAGAAACCTCAAAGAACGAAGACACGAGACGTTCAACGCTCTCCGTGTCTTCCAGGTCATAACCGCCTCGGTACTTGCCGGTTTAATGTGGTGGCATTCTAACTTCCAAGACATCCAAGACCGGCTCGGCCTCCTCTTCTTCATGTCCATATTCTGGGGCGTCTTCCCTTCCTTTAACTCCGCTTTCGCATTCCCTCAAGAACAAGCCATCTTCGTCAAAGAACGTGCTTCCGGAATGTACAATTTGTCCTCATACTTTATAGCTCGAATCGTTGGAGACTTGCCTATGGAGCTTGTTCTTCCAACGGTTTTTCTAACCATTGCTTACTGGATGACGGAATTGAGGCCGGAATTGGGTGCTTTTCTCTTAACACTGTTGGTGCTATTAGGGTACGTGCTTGTTTCACAAGGGCTCGGACTTGCTTTAGGTGCAATCATAATGGATGCTAAACAGGCTTCTACGTTAGTGACCGTGACAATGCTAGCGTTTGTGTTAACAGGAGGGTATTACGTGCATAAAGTACCAGCTTGCATGGCTTGGATCAAGTACGTTTCAACCACGTTCTATAGCTATAGGCTTCTTATAAGTGTCCAATATGGAGATGGGAAAAAGATTTCGTCTCTATTGGGCTGCTCTTCTCCAATATTACATCATGATTATGGCAGTGATTACAACCGATCGGCGAGCTGTAAGTTCATCGAAGAGGATGTTAACGCGGCGAGCCAGATTAGGCCGGGAATGTGCGTGCTGATCTTGGCTTCTATGTTTGTGGGGTATAGATTATTAGCATACCTTGCACTGAAGAGGATCAAAGTTTGA 2082 48.03 MPAAGVVGDMTPPTTNGAGSSDQLRAPPRDPRHLPPSPPITLNFMDICYKMKSDSSSKHRAGTTLDRIFNHVPTHRSSSSSTNTLQERNILSGVTGMALPGEILAILGPSGSGKSTLLNALAGRLQLGHNLTGTILANGKKISKSILRRTGFVTQDDVLYPHLTVHETLVFCALLRLPKTLSKKEKITVAESVMSELGLVKCQSTIIGNSFIRGVSGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAHRLITTLGSLAREKGKTVVTSMHQPSSRVFQMFSSVLVLSEGRCLYFGKGSEAMSYFESVGFSPNFPMNPADFLLDLANGVCHLENNNTNEKDKPNIRQTLVSSYNTILAPSVKAACMEITTATANQTNQQISNFIETHSSTRSSSSDRRDYFNPRITLSTWLNQFTILLQRNLKERRHETFNALRVFQVITASVLAGLMWWHSNFQDIQDRLGLLFFMSIFWGVFPSFNSAFAFPQEQAIFVKERASGMYNLSSYFIARIVGDLPMELVLPTVFLTIAYWMTELRPELGAFLLTLLVLLGYVLVSQGLGLALGAIIMDAKQASTLVTVTMLAFVLTGGYYVHKVPACMAWIKYVSTTFYSYRLLISVQYGDGKKISSLLGCSSPILHHDYGSDYNRSASCKFIEEDVNAASQIRPGMCVLILASMFVGYRLLAYLALKRIKV 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10154299 10160313 - Conep04aG0125600.1 Cone4ag1210 436188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1210 693 SMART AAA_5 100 293 IPR003593 GO:0016887(InterPro)
Cone4ag1210 693 Pfam ABC transporter 99 243 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone4ag1210 693 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 40 685 IPR050352 GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cone4ag1210 693 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 74 316 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone4ag1210 693 Gene3D - 79 310 IPR027417 -
Cone4ag1210 693 Pfam ABC-2 type transporter 415 620 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Cone4ag1210 693 MobiDBLite consensus disorder prediction 1 38 - -
Cone4ag1210 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 310 IPR027417 -
Cone4ag1210 693 FunFam ABC transporter G family member 22 78 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1210 K05681 - - rcu:8259382 885.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1210 Cone-Chr4:10154299 Cone6ag0480 Cone-Chr6:2378456 1.61E-190 dispersed
Cone4ag1210 Cone-Chr4:10154299 Cone7ag0920 Cone-Chr7:7217779 5.53E-219 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1424 Blo01g01706 . . . . . . . . . . Cma09g01112 . . . . . . . . . . . . . . . . . . . Cone4ag1210 . . . . . . . . . . . . . . . . . Cmo09g01118 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009054 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34