Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1222 ATGTTCATGGGCGCGGTTGAAATTTCTAACCCTTGCTCTCTAATTGTGAGTAAATCCAATAAAGGTCATCCATTGTCTGACCCATCGCGTAGACTCAATTGCGCACTTGCTGGAAATAAGACGAAGCAACTTATTGCTATGACATCTGCTTCTCCAGTAAAGCACGTCGGTGATGGTCGGCAGCAATTGACTGGGGACTCTTTCATTCGGCCCCATTTGAGAAAATTGTCCCCCTATCAGCCTATTCTTCCTTTTGAGATTTTGTCATCTCGTCTTGGAAGGAAGCCTGAGGATATTATCAAATTAGATGCAAATGAAAATCCTTATGGTGCTCCACCTGAGGTTCTTGAAGCCTTGGAGGGACTAAAGTTCCCTTACGTCTATCCTGATCCAGAAACCTGTCAATTGCGTGCTGCACTTGCTGAAGATTCTGGTCTTGAATCTGATTATATTCTTGTGGGATGTGGTGCAGATGAGCTCATTGATCTCATTATGAGATGTGTGTTAGACCCTGGTGACAAAATCGTGGACTGCCCTCCGACCTTCACAATGTATGGATTTGATGCGGCAGTCAACGGTGCTCTTGTCATTAAAGTTCCTAGGAAGTCAGATTTCAGCTTGAACGTGGAACTAATCTCAGATGTTGTAGAACGTGAGAAGCCAAAATGCATATTTCTTACATCTCCTAATAATCCAGACGGGAGTATAATTGATGAAGAAGTTCTATTGAAAATCCTTGAGCTCCCTGTACTGGTTGTACTAGATGAAGCATACATTGAGTTTTCAGGAATAGAATCAAAGATGCAATGGGTGAAGAAGTATGAGAACTTAATTGTTCTTCGGACTTTTAGTAAAAGAGCAGGTTTAGCGGGACTTCGTGTGGGATATGGAGCATTTCCTCGAAGTATAATAGAGTTCCTTTGGCGAGCAAAACAACCTTACAATGTCTCTGTTGCTGCTGAAGTTGCTGCCTGTGCTGCATTGAAAAATCCCACCTATCTAGAGAAGGTGAAAAATGCTTTGGTAGAAGAACGTGAAAGGCTTTATAACCATTTGAAGGATGTTCCATTCTTAAATCCATATCCCAGTCATTCCAATTTCATTCTTTGTGAGGTTACATCCCGGCATGAATGCCAAGAAAGTGAAGGAGGATCTTGCAAAAATGGGTGTTATGATTCGGCACTACGACAAGAAAGAACTGAAGGGTTATGTCCGTGTGACTGCGGGGAAGCCCGAACACACTGA 1245 42.65 MFMGAVEISNPCSLIVSKSNKGHPLSDPSRRLNCALAGNKTKQLIAMTSASPVKHVGDGRQQLTGDSFIRPHLRKLSPYQPILPFEILSSRLGRKPEDIIKLDANENPYGAPPEVLEALEGLKFPYVYPDPETCQLRAALAEDSGLESDYILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYGFDAAVNGALVIKVPRKSDFSLNVELISDVVEREKPKCIFLTSPNNPDGSIIDEEVLLKILELPVLVVLDEAYIEFSGIESKMQWVKKYENLIVLRTFSKRAGLAGLRVGYGAFPRSIIEFLWRAKQPYNVSVAAEVAACAALKNPTYLEKVKNALVEERERLYNHLKDVPFLNPYPSHSNFILCEVTSRHECQESEGGSCKNGCYDSALRQERTEGLCPCDCGEARTH 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10210000 10212598 - Conep04aG0126800.1 Cone4ag1222 436200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1222 414 NCBIfam histidinol-phosphate transaminase 70 376 IPR005861 GO:0000105(InterPro)|GO:0004400(InterPro)
Cone4ag1222 414 PANTHER HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED 56 377 - -
Cone4ag1222 414 SUPERFAMILY PLP-dependent transferases 78 373 IPR015424 -
Cone4ag1222 414 CDD AAT_like 100 372 - -
Cone4ag1222 414 Pfam Aminotransferase class I and II 98 376 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Cone4ag1222 414 Gene3D Aspartate Aminotransferase, domain 1 97 379 IPR015422 -
Cone4ag1222 414 Gene3D - 128 329 IPR015421 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1222 K00817 - - csv:101214429 589.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1222 Cone-Chr4:10210000 Cone7ag0913 Cone-Chr7:7160534 2.06E-227 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1399 . . . . . . . . . . . Cma09g01142 . . . . . . . . . . . . . . . . . . . Cone4ag1222 Cone7ag0913 . . . . . . . . . . . . . . . . Cmo09g01152 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003567 1 1 1 1 1 2 2 2 2 1 2 2 2 1 2 2 2 2 2 2 1 1 1 1 1 1 1 3 2 1 46