Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1225 ATGCTTCTCCAGACGAGCTTATCTGTTCTTCCTCCCTATCGCTCTCTCCTCTCATTTGGGCCTCTCCGGCCCAAGCCTTTTACCAACATCTTTCTTCAAGGAATCGGGACAACCTTCAGACAGGGTTACGGACTGAATCTCTCCAAGTTTCCAACTTCCCAGATATATCAAAGGGAATTGGTATATGAATCCCAGGACTTTCACAGTAATTTCTCTTTCCCTGTTTTCTTCTCATATGATGGAGAAGGGAAGAAAAACTCATCACTATGGCCGCACGCCTTTTCATCCGGACCCATCCTGTGGCTACTCTCTTCACAATCAGCACTTGCAAGCGAAGATATCAAAGCAAACATGGCTATATATGAAGTGAGCGAATTATTTGAATTAAGTATACAGCTATCATATCTACTACTACTGCTCGGTCTTCTCGGAGCAGGCACTTTCTTTGTGATCCGTCAAGTCCTTGTGCGCAGAGAACTCGATCTATCTGCAAAGGAATTGCAAGAACAGGTAAGGAGTGGTGATGGAAGTGCCACTGAGTACTTTGAACTTGGTGCTGTTATGCTAAGGAGGAAATTTTACCCGGCTGCAACTAAATACTTGCTTCAAGCAATTGAGAAGTGGGATGGAGATGATCAAGATCTTGCCCAGGTTTACAATGCGCTTGGCGTGAGTTATGTTCGGGATGGTAAGCTTGAAAAGGGAATAGCACAGTTCGAGAAGGCGGTGAAGCTTCAACCGGGCTATGTAACGGCTTGGAACAACCTTGGAGATGCCTATGAAATCAAGAAAGAATTTAAGTCGGCTCTCAAGGCATTTGAAGAAGCACTCCTGTTCGATCCTAACAACAAGGTAGCTCGGCCAAGACGTGATGCCTTGAAAGACCAAGTCGAGATGTACAAGGGAGTTCCTTTGAAATTTAAAAAGTAG 930 44.73 MLLQTSLSVLPPYRSLLSFGPLRPKPFTNIFLQGIGTTFRQGYGLNLSKFPTSQIYQRELVYESQDFHSNFSFPVFFSYDGEGKKNSSLWPHAFSSGPILWLLSSQSALASEDIKANMAIYEVSELFELSIQLSYLLLLLGLLGAGTFFVIRQVLVRRELDLSAKELQEQVRSGDGSATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRDGKLEKGIAQFEKAVKLQPGYVTAWNNLGDAYEIKKEFKSALKAFEEALLFDPNNKVARPRRDALKDQVEMYKGVPLKFKK 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10221131 10223054 + Conep04aG0127100.1 Cone4ag1225 436203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1225 309 ProSiteProfiles TPR repeat region circular profile. 250 283 - -
Cone4ag1225 309 SMART tpr_5 216 249 IPR019734 GO:0005515(InterPro)
Cone4ag1225 309 SMART tpr_5 178 211 IPR019734 GO:0005515(InterPro)
Cone4ag1225 309 SMART tpr_5 250 283 IPR019734 GO:0005515(InterPro)
Cone4ag1225 309 ProSiteProfiles TPR repeat profile. 250 283 IPR019734 GO:0005515(InterPro)
Cone4ag1225 309 Pfam Tetratricopeptide repeat 221 281 - -
Cone4ag1225 309 Gene3D Tetratricopeptide repeat domain 155 302 IPR011990 GO:0005515(InterPro)
Cone4ag1225 309 ProSiteProfiles TPR repeat region circular profile. 216 247 - -
Cone4ag1225 309 ProSiteProfiles TPR repeat profile. 216 249 IPR019734 GO:0005515(InterPro)
Cone4ag1225 309 SUPERFAMILY TPR-like 177 287 IPR011990 GO:0005515(InterPro)
Cone4ag1225 309 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 116 287 - GO:0009535(PANTHER)|GO:0048564(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1225 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1225 Cone-Chr4:10221131 Cone7ag0911 Cone-Chr7:7148645 1.08E-189 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1394 . . . . . . . . . . . Cma09g01145 . . . . . . . . . . . . . . . . . . . Cone4ag1225 Cone7ag0911 . . . . . . . . . . . . . . . . Cmo09g01156 . . . Car09g01039 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008865 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33