Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1226 ATGGATAACCATCATGAAGAAAGGCCGAGTGTTGTTGATGCCTGGAAAAAGCCTTCATCTTCCAAGAATGAACTACCTAACAATATCTCATCAGAAGAGGTACCATTATCTTTTACCAATTTCAATAATCCCCAGCAACAGAATCATCCGAAATGGAATGGACAGGACACCTCTATTCTAGACTATGGCATTAGCATGGAACCTTCTTTCCTTGAATTCAGTCAAACTAACCCAAACACTAATCAGATCAAAATCCCCGATAAAGAAGACGATCAAACAAATCCAACCCCCCGAAACAGTAACAAAATCCCAGAGTGGGATCCTCGAGTGATGCTTAACAACCTCTCTTTCCTCGAGCAAAAGATCCATCAACTCCAGGAAGTAGTCCATTTAATCATGGGCCGAAGAACCCAACAAATTCTGATTCGACCAGATGAGTTTGAAGCTCAACAGCAGCAGCTAATCACAGCCGATCTCACCTCCATTATAGTCCAGCTCATATCTACAGCGGGAAGTCTTCTCCCTTCCATGAAGCATAACCTCTCTACAGTTTCTCCTTCAATTGCGCAGCTTGGACAGTTTAATGGGTCTTTACTTCCATCCGCATTAGGAGGGCCTAGCTCTAGTGTTTTTCCACCTCAATATAATGAGGTGACCAAAATACCTGACCAATCCAACCAGATTGATGAACAAAAATTACAGAACTACCCTTTTGAAGAAAATGAGTTGAAAGAAGAGGAAGATCCTGAGGAAGGTGAGAACCTTCCACCTGGGTCTTATGAAATCTTGCAACTTGAGAAGGAGGAAATTCTTGCACCTCATACTCATTTTTGCACTATATGTGGGAAAGGGTTCAAAAGGGATGCAAATTTACGTATGCATATGAGAGGTCACGGAGACAAGTATAAAACTCCGGCCGCTCTAGCAAAACCCAATAAAGAATCAGGCTTGGAATCTATGCTTATAAAAAGGTATTCTTGCCCTTATAATGGGTGCAAGAGGAATAAAGATCACAAAAAGTTTCAACCATTGAAGACTATTTTGTGTGTCAAGAACCATTACAAGAGAACCCATTGTGACAAAAGTTACACTTGTAGTAGATGCAATGTCAAGAAGTTTTCGGTCCTAGCGGATCTTAAGACCCATGAGAAGCATTGTGGTAAGGACAAATGGCTTTGTTCTTGTGGGACCACATTTTCGAGAAAGGACAAGCTTTTCGGGCATATTGCTCTATTCCAAGGACATACTCCAGCTATTCCTCATGACGAATCAAAAGGAACAAGTCTGGTGTTAGATAGAGGGGAAGGGAGTGAGGGTAAAAAGAACAAAGTTGGGAGTTTGAACTTCAGTTTTGGAAGTGGTATTGAACCTATGGTGGATATTAAAGAAGCAGGAGGAGGAGGTATTGATGATCCTACAAGTTATTTCTCGCCACTGAGTTTCGATGGGTGCAATTTTGGCGGGTTTCATGAGTTTCCTCGACCTCCATACGAGGACCCGGAGAATTCGTTTTCTTTCCTTCTTCAAGGAGCTAGTACCTACTCTCAGAAATCTGGAGCAGAGTCGAGCTCTAATAATCTATAA 1584 41.86 MDNHHEERPSVVDAWKKPSSSKNELPNNISSEEVPLSFTNFNNPQQQNHPKWNGQDTSILDYGISMEPSFLEFSQTNPNTNQIKIPDKEDDQTNPTPRNSNKIPEWDPRVMLNNLSFLEQKIHQLQEVVHLIMGRRTQQILIRPDEFEAQQQQLITADLTSIIVQLISTAGSLLPSMKHNLSTVSPSIAQLGQFNGSLLPSALGGPSSSVFPPQYNEVTKIPDQSNQIDEQKLQNYPFEENELKEEEDPEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDKYKTPAALAKPNKESGLESMLIKRYSCPYNGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNVKKFSVLADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPHDESKGTSLVLDRGEGSEGKKNKVGSLNFSFGSGIEPMVDIKEAGGGGIDDPTSYFSPLSFDGCNFGGFHEFPRPPYEDPENSFSFLLQGASTYSQKSGAESSSNNL 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10224325 10226785 + Conep04aG0127200.1 Cone4ag1226 436204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1226 527 Gene3D Classic Zinc Finger 275 298 - -
Cone4ag1226 527 MobiDBLite consensus disorder prediction 1 31 - -
Cone4ag1226 527 SUPERFAMILY beta-beta-alpha zinc fingers 275 298 IPR036236 -
Cone4ag1226 527 MobiDBLite consensus disorder prediction 72 105 - -
Cone4ag1226 527 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 89 507 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Cone4ag1226 527 MobiDBLite consensus disorder prediction 16 31 - -
Cone4ag1226 527 ProSitePatterns Zinc finger C2H2 type domain signature. 278 298 IPR013087 -
Cone4ag1226 527 SMART c2h2final6 363 385 IPR013087 -
Cone4ag1226 527 SMART c2h2final6 325 358 IPR013087 -
Cone4ag1226 527 SMART c2h2final6 276 298 IPR013087 -
Cone4ag1226 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 276 303 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1226 Cone-Chr4:10224325 Cone9ag1475 Cone-Chr9:10898256 1.13E-75 dispersed
Cone11ag1329 Cone-Chr11:9776655 Cone4ag1226 Cone-Chr4:10224325 4.94E-70 transposed
Cone4ag1226 Cone-Chr4:10224325 Cone7ag0909 Cone-Chr7:7133436 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45989 PF00069 Pkinase 6.00E-26 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1226 - - - 0.0