Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1227 ATGGCTGACATCAACGAAGCCGAACCAAGATCTAAGAGAAAAATACCAGTCTTTTCGGTCCTGAAGAATGGTGCCATTCTCAAGAACATCTTCCTCGTTAACAATACTGATCCACCTCCATTCAGCTCCGTCTCTAAATCGATAGCATCGAATCCAAGTTTCGAAACCCTAGATCAAGAAAACGAAGAGATTTCAATCATCGGAAGGCACCCTGAGTGCAACATTATGCTTACACACCCCAGCGTCAGCAGATTCCATCTCGAGATTCATTCAAACCCGCCTTCGCAGAAGCTCTATGTGGTCGATTTATCGTCAGTGCATGGGACTTGGGTCTCGGAGAAGAAAATCAAAGCAGGGGTTCGAGTGGAGCTGAAAGAAGGCGATACTTTGAGGCTCGGTGGTTCCAGTAGGGTTTATAGGCTGCATTGGATTCCTTTGAGCCAGGCCTACGATTTTGATACCTCTTTTGCGTCAGCGTTGGATGAACCCATAGCAGAAGACAAAGATTATGGGAAGACTGAGTTTCAGGAAGAAAATAATGTGGGAACTTACGAGGGGAACAACTCTGAGCTGATTGAAAGTAGCGAAAAGCAATCACTGGATCCAGTTTGGGACTGTCTAGAGTCTTTAGTTTCTGAAGAGGATTTAGAGGTAACTGTGAGAAAAGAGATCATCCCTTCAGCACCTCCAATGGATGAAGACATGATAGTGATGTGGACTAACCATGAAAGCCCATCAAGGTATAGGTCTGAAGAGGAAGCAAGAATGTGTAGCTCTTTTGCCTTTCCTGCCAAAAATGACTTGATGAATTTGTCTTTGGTGGATGAGGAGGAGGATGTGTTCTTGGAGACTGAAAATCAAGAATTTGACATCGAAAATCAGATCCGGCAATCCTTTTGCGTGCCTCTTGGAATGGACAATCTGTTTTCTCCAGTAGGCAATGTTCTTGTACCCATCGGATCTGAAGTACCAGACGTGGAAAACAAAAGTCCAGAACATATCCTTGATTTGGAATCACCGGAAAATAGGGAAAAGATAGAGAACCCTACCATTGAAGTACTCGAAGAGACCCTAGAATCTCCTATGAATTGCAAGCCGCAATTCGAAGACGAAATGTATGAGAATTCTGTGGCAGAGTCAGAATCAACATTGCTGGAGAATCCTAGTTTTGAATGCTCTGTTGAGGAGAAACATTGCACGGTTGTAGAAATAGAAAACCAAGGTATATTAGAAGAATCAATTGACTCATCTTTACCTGTTGAGGGAGTTACCTTATATTTTGAAGATTGCAATAGAAAAAAGAGCTCACAATCTCTCTTCGCTGAAGAAAAACTCTCTGAAACTCATGTCTCAGAAACCTCTCCTGTAAAACCAGAGAAGAATTTGACCATGGGCAGCATTTGGTCAAGAAGAGGTAAACCTGCCACTGTTCCTCAGATTCAAACTGGGGTAAACGCAGGGGCTATGATTGAAGATAAAGTTAAGACCAAAGATGACTCAATCTCAAGGGCCCCCTTGTCCAATTCAGAAGGGGCGGGAGAAGAAATCTTCGCTCCAGACAAGGAGAATTTCACTCTAAATACCCGTTTTCTGAAGTCATTGAAGAAGAAGGGTAAATTTGGAGAAATCATCATGCATTCCAACTCAAGAAAAAAACTTTATTCGAAAGTTAAAAGCAGTCCAAGTATTGATATGGATGAAGAAGATTCTAGTCCATTCTCAGATAAGGAGAACTGGACACCTAAACCACTCCTAGAACAGAAATTGGCTGGAGTGACTAATTCTAGAAAAGGAGAAAGGTTGAAAAAGGAGAGGCTACTTGTAAATAAAAGAGCAGAAAGGATGCCATTTCAATCTCTGCAAGTAAGCTCTTCCAGAACGAGCAGATCAGAGTCTTCATCCCCTAATTCTGCTGCAATGAGACGCAGTTATCTCAATTGCACTCAAACTATTAAGAAAGAGAATAATCCTGTTGGAGATGAAAGGAAAGGATGGATTATGGTGGTGGACATATCTTCCCTTCTGGACAAAGAATCGATAAAATGGCTACAACTTTTGCAAGGCCTCAAGGGAACACGTTTGATAATTCCTAGAATGGTCATAAAGGAGCTGGAGTATTTGAAGAGGCGAGGCGGTCTCTTTAGAAGAACTACAATTTATTCATCAGTATTGGAATGGATCAAAGAGAGTACGGAGAAAACAAACTGGTGGATTCAAGTTCAAAGCTCAGTTGATGAAGAAAGCCTCCCTGCTCCTACCCCTACTGCTCTTAGTAGTAGCCATGAGAGTTTTGTGGCACTCGTGTCACCAACTGCTGAAGACCATATCCTTGACAATACTCTTCATTTACGGAAAATGAATAAAGATACGCAGATTGTTCTTCTAAGTAGTGATGTGACTACGAAAATCAAAGCTATGGCAGAGGGATTACTCTGTGAAACAGCTGAGGAATTTCGTGAGAGTTTGGTGAACCCTTTTTCCGAAAGGTTCTTGTGGTCCGATAGCTCCCCAAGAGGACTCACTTGGTCTTACTTGGATGATTATATTTTGAGGGAAAGGTATGATCGTTGTTCTTCGAAGAAATCGTCACAGGAAGTTGGCGGCGCTAAGGGCTTAAAGCTCATTCTACTCCACAATTCCCATTATGGAAGATTAGTTTCATGA 2664 42.15 MADINEAEPRSKRKIPVFSVLKNGAILKNIFLVNNTDPPPFSSVSKSIASNPSFETLDQENEEISIIGRHPECNIMLTHPSVSRFHLEIHSNPPSQKLYVVDLSSVHGTWVSEKKIKAGVRVELKEGDTLRLGGSSRVYRLHWIPLSQAYDFDTSFASALDEPIAEDKDYGKTEFQEENNVGTYEGNNSELIESSEKQSLDPVWDCLESLVSEEDLEVTVRKEIIPSAPPMDEDMIVMWTNHESPSRYRSEEEARMCSSFAFPAKNDLMNLSLVDEEEDVFLETENQEFDIENQIRQSFCVPLGMDNLFSPVGNVLVPIGSEVPDVENKSPEHILDLESPENREKIENPTIEVLEETLESPMNCKPQFEDEMYENSVAESESTLLENPSFECSVEEKHCTVVEIENQGILEESIDSSLPVEGVTLYFEDCNRKKSSQSLFAEEKLSETHVSETSPVKPEKNLTMGSIWSRRGKPATVPQIQTGVNAGAMIEDKVKTKDDSISRAPLSNSEGAGEEIFAPDKENFTLNTRFLKSLKKKGKFGEIIMHSNSRKKLYSKVKSSPSIDMDEEDSSPFSDKENWTPKPLLEQKLAGVTNSRKGERLKKERLLVNKRAERMPFQSLQVSSSRTSRSESSSPNSAAMRRSYLNCTQTIKKENNPVGDERKGWIMVVDISSLLDKESIKWLQLLQGLKGTRLIIPRMVIKELEYLKRRGGLFRRTTIYSSVLEWIKESTEKTNWWIQVQSSVDEESLPAPTPTALSSSHESFVALVSPTAEDHILDNTLHLRKMNKDTQIVLLSSDVTTKIKAMAEGLLCETAEEFRESLVNPFSERFLWSDSSPRGLTWSYLDDYILRERYDRCSSKKSSQEVGGAKGLKLILLHNSHYGRLVS 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10227013 10230165 - Conep04aG0127300.1 Cone4ag1227 436205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1227 887 ProSiteProfiles Forkhead-associated (FHA) domain profile. 65 116 IPR000253 GO:0005515(InterPro)
Cone4ag1227 887 Gene3D - 661 822 - -
Cone4ag1227 887 SMART FHA_2 64 116 IPR000253 GO:0005515(InterPro)
Cone4ag1227 887 Pfam PIN domain 668 815 IPR002716 -
Cone4ag1227 887 SUPERFAMILY SMAD/FHA domain 49 146 IPR008984 GO:0005515(InterPro)
Cone4ag1227 887 PANTHER TRANSMEMBRANE PROTEIN 18 5 875 - GO:0031965(PANTHER)
Cone4ag1227 887 MobiDBLite consensus disorder prediction 618 641 - -
Cone4ag1227 887 CDD FHA_PS1-like 15 147 - -
Cone4ag1227 887 MobiDBLite consensus disorder prediction 554 581 - -
Cone4ag1227 887 Pfam FHA domain 66 133 IPR000253 GO:0005515(InterPro)
Cone4ag1227 887 Gene3D - 4 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1227 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1227 Cone-Chr4:10227013 Cone7ag0908 Cone-Chr7:7129507 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1391 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1227 Cone7ag0908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012603 0 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 29