Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1261 ATGGATCCATGTCCCTTTGTGCGACTCACGGTAGGTAATCTCGCTTTGAAGATTCCGGTCGCTTCGAAGCCTGCTCGTTCCGTCGTGCATCCATCTTCCTCTCCATGTTTCTGCAAAATCAAGTTCAAGAACTTTCCGCTTCAAATCGCCGTCGTTCCCTTCGTCCCTGCGGAGAATCAGTTGCCCGAAGGTCACGTCCAGTCCGTTGCTGCTGGGACATTTCATCTCACTAAATCTGATCTCGACAAACTCACCGGGAAATCCATATTTTCCGGTAAACCTTGCCTGAAAATCTCGATTTACAGCGGGCGAAACGGCACCACATGCGGTGTGAACTCCGGGAGGTTGTTAGGGAAAGTGTCCGTGCCGTTGGATCTGGCGGGAAGTGAATCGAAGACAGTAGTGTTTCACAATGGATGGATTTCTGTAGGAAAGGCCTCGAAAGAATCATCATCCCCTACACAATTCCATTTGAATGTGAGAGCAGAACCTGATCCCCGCTTCGTATTCCAGTTCGACGGCGAGCCTGAATGTAGCCCACAAGTTTTTCAAATCAAAGGAAAAATCAGTCAGCCTGTCTTCACCTGCAAATTCAGCTTCAGAACCGCCGATCGGACTCTCAGATCAAGGTCTTTCTCTTCTGAATATAGTAGCTCGAAAAGCTGGCTAGGCTCATTTGGAAGCGAGAGAGAGCGGCCGGGAAAGGAGAGAAAAGGCTGGTCAATCACCGTCCACGACCTCTCCGGCTCTCCGGTCGCCGTCGCTTCTATGGTCACGCCTTTCGTTGCTTCTCGCGGAGCAGATCGAGTTAGCCGTTCAAACCCTGGCTCGTGGCTTATTCTTCGTCCAGGAGACAGCACCTGGAAACCATGGGGCCGGCTCGAGGCATGGCGTGAGCGAGGCGGGTCCGATGGACTCGGCTACCGGTTCGAGCTGATTCCTGACACCAACGGCGGCATGAGCGCCGCCGGAATTGTACTAACTGAATCAGCTTTGAGTTTACACAATGGAGGGAAGTTTCTGATAGACTTAGGAGGAAACTCGAACTGTAGAGCAACGCCTGCGAGCTCGACTTCTCCGGCATGTAGTCCGAGGGGCAGCGGAGATTTCAGTTACGGCCTGTGGCCCTACTCCGTTTACAGAGGGTTCGTGATGTCAGCTTGCGTGGAAGGGGAAGGAAAGTGCAGTAAACCGAGGGTGGAGATTAGTGTTCCTCACGTGAACTGTACGGAAGATGCTGCGGCTTTTGTGGCCCTAGCTGCCGCTATTGATCTTAGCATGGACGCTTGCCGGCTTTTCTCTCAGAAACTCAGGAAGGAGCTCTGCCAGCCGTTGGATCGTCTTCGTTGA 1350 52.67 MDPCPFVRLTVGNLALKIPVASKPARSVVHPSSSPCFCKIKFKNFPLQIAVVPFVPAENQLPEGHVQSVAAGTFHLTKSDLDKLTGKSIFSGKPCLKISIYSGRNGTTCGVNSGRLLGKVSVPLDLAGSESKTVVFHNGWISVGKASKESSSPTQFHLNVRAEPDPRFVFQFDGEPECSPQVFQIKGKISQPVFTCKFSFRTADRTLRSRSFSSEYSSSKSWLGSFGSERERPGKERKGWSITVHDLSGSPVAVASMVTPFVASRGADRVSRSNPGSWLILRPGDSTWKPWGRLEAWRERGGSDGLGYRFELIPDTNGGMSAAGIVLTESALSLHNGGKFLIDLGGNSNCRATPASSTSPACSPRGSGDFSYGLWPYSVYRGFVMSACVEGEGKCSKPRVEISVPHVNCTEDAAAFVALAAAIDLSMDACRLFSQKLRKELCQPLDRLR 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10398619 10400289 - Conep04aG0130700.1 Cone4ag1261 436239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1261 449 PANTHER OS08G0163500 PROTEIN 1 443 IPR010410 -
Cone4ag1261 449 MobiDBLite consensus disorder prediction 217 237 - -
Cone4ag1261 449 Pfam Protein of unknown function (DUF1005) 1 442 IPR010410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1261 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0286 Cone-Chr14:1316817 Cone4ag1261 Cone-Chr4:10398619 2.16E-108 dispersed
Cone15ag0310 Cone-Chr15:1433505 Cone4ag1261 Cone-Chr4:10398619 2.47E-104 dispersed
Cone4ag0774 Cone-Chr4:4510134 Cone4ag1261 Cone-Chr4:10398619 1.82E-152 dispersed
Cone4ag1261 Cone-Chr4:10398619 Cone7ag0719 Cone-Chr7:4230427 3.73E-137 dispersed
Cone12ag1028 Cone-Chr12:8610607 Cone4ag1261 Cone-Chr4:10398619 2.22E-135 wgd
Cone17ag1146 Cone-Chr17:8439796 Cone4ag1261 Cone-Chr4:10398619 4.12E-262 wgd
Cone20ag0581 Cone-Chr20:3341565 Cone4ag1261 Cone-Chr4:10398619 3.60E-258 wgd
Cone4ag1261 Cone-Chr4:10398619 Cone7ag0882 Cone-Chr7:6857898 1.04E-301 wgd
Cone4ag1261 Cone-Chr4:10398619 Cone8ag1063 Cone-Chr8:9669953 4.99E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g584 Blo01g01782 . . Bda03g00441 Bpe02g00159 Bpe04g00407 Bma04g00418 Bma01g02567 . . Cma01g01450 Cma09g00617 . . . Cpe06g00476 . . . . . . . . . . . . . . . Cone4ag1261 Cone7ag0882 Cone17ag1146 Cone20ag0581 Lsi04g02313 Csa03g04531 Chy04g00172 . . . Bda11g00817 . . . . . Sed12g1374 Cmo01g01503 Cmo09g00602 . . . Car09g00547 . Cpe02g00499 Bhi09g02549 Tan01g3897 Cmetu04g0381 . Hepe01g2202 Mch11g0751 . Cla11g01463 Cam11g1515 Cec11g1554 Cco11g1549 Clacu11g1679 Cmu11g1496 Cre11g1917 . . . Cme04g00199
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004559 2 1 1 2 2 0 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41