Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1262 ATGGCCTCGAAGCTTTTGAATCGAGATCAGCTTCGAGCAAAGAGGATTGTGGAATCGGTTGGGGATAGGGTTTCCGGAAATTCTTCGTCGTCTTCTTCGTCGGTTCGAAACCCTAGGTACCGCTGTAAGCAGTTATCCAATCTTTACTCTGCGCAGCAGCTGATGCAGAATCACTCCAACTTCAAGCGAAGTGGCGTGCCGTTAAGGTTCATGTTCTATCAGGGCGGGTGCTGGGTGGATTTCCCAAGCAAAGTGCTGGAGACCTTGCGATCGGCGTTCTCGGAAGGCAAGCCGGTCATTGACTCGCAAATTGAGGGGTCGAAGTACCTGTTCGATTTTCTTCGTATGCTTCAGATTGATTTTGAGACTGGATTTCAGAGGTCAATTGCTTGGATCGATCAAAATAGCAAGTGCTTCTTCCCTAAATTGTTCATCGACGAAGAGTCTGAAAATGGTACGGATAATTCCATGAACCAGAAGATTACAATCGAGATTCAAATTGACGGGGATTTGGGAAAGAGGAAGAGGCAAGATGAAGAATTGGATGCGGAGGAGGAGGACATCGAGGTTAATTCAGGAAACCGGCATGGAAATGGCGACGTTTCAAAAAGGCAGCGAATGATTGCATCGGAGTTGGAAAGCCCTAGATGGCCAAGTACGAAGCAGTGTACTCGCACAGAGCCATTGGAGAGGGCTCGCTACGAAGTATTTCAGAAGCAGAATCATATCACGAAAGCTGCTCGAGGAACGTCCAATCTGGTTTATGCTTGGTACGGATCTTCTTCGGTAAAAGCTGTAGGCGACATATTGAGTCATGGGTTTTCAGAGCCCAGCAGGACTACTGGCTCTGATTCTTATGGGATTGGTGTTTATATGTCTCCTGTGCAGTTTCCGCAGTTGAGTGCTTTAAAATCAGAGGCAGATAATAATGGTGAGAAGCATATCATTCTATGCCGGGTTATATTAGGCAATGTGGAAAAAGTGGAGGCGGGTTCTCAGCAATCTCATCCTTCAAGTGTAGATTTCGATACTGGTGCGGATGACCTGAGAAATACTAGGTGGCATGTTATTTGGTGCTCGAGTATGAACAGACACATTTTGCCCGAGTATGTTTTGAGCTACAGACCGTCCAACAGTGTGCAAGGTTGA 1149 46.65 MASKLLNRDQLRAKRIVESVGDRVSGNSSSSSSSVRNPRYRCKQLSNLYSAQQLMQNHSNFKRSGVPLRFMFYQGGCWVDFPSKVLETLRSAFSEGKPVIDSQIEGSKYLFDFLRMLQIDFETGFQRSIAWIDQNSKCFFPKLFIDEESENGTDNSMNQKITIEIQIDGDLGKRKRQDEELDAEEEDIEVNSGNRHGNGDVSKRQRMIASELESPRWPSTKQCTRTEPLERARYEVFQKQNHITKAARGTSNLVYAWYGSSSVKAVGDILSHGFSEPSRTTGSDSYGIGVYMSPVQFPQLSALKSEADNNGEKHIILCRVILGNVEKVEAGSQQSHPSSVDFDTGADDLRNTRWHVIWCSSMNRHILPEYVLSYRPSNSVQG 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10401666 10404433 - Conep04aG0130800.1 Cone4ag1262 436240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1262 382 Pfam Poly(ADP-ribose) polymerase catalytic domain 235 329 IPR012317 GO:0003950(InterPro)
Cone4ag1262 382 SUPERFAMILY WWE domain 71 134 IPR037197 -
Cone4ag1262 382 ProSiteProfiles WWE domain profile. 56 131 IPR004170 -
Cone4ag1262 382 MobiDBLite consensus disorder prediction 188 203 - -
Cone4ag1262 382 Gene3D - 51 136 IPR037197 -
Cone4ag1262 382 Gene3D - 202 375 - -
Cone4ag1262 382 ProSiteProfiles PARP catalytic domain profile. 165 382 IPR012317 GO:0003950(InterPro)
Cone4ag1262 382 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 27 378 IPR044964 -
Cone4ag1262 382 MobiDBLite consensus disorder prediction 173 203 - -
Cone4ag1262 382 SUPERFAMILY ADP-ribosylation 245 376 - -
Cone4ag1262 382 Pfam WWE domain 74 130 IPR004170 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1262 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1262 Cone-Chr4:10401666 Cone7ag0880 Cone-Chr7:6845762 4.19E-232 dispersed
Cone4ag1262 Cone-Chr4:10401666 Cone12ag0487 Cone-Chr12:3246133 1.62E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g581 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1262 Cone7ag0880 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010411 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 0 32