Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1264 ATGAATGTGATTGGACTTTATTTGATCATATTATCGTCTTCTCGGTATATAGCAGACATGTCTGCTCCATCAACTCCTTCTAAGAGACCATTGGATGAGAACTGTACTGAATCAGATGAAAATGGAAAGAGTAAGCGGCAAAAGCCAACAGGGTCCCATTCTCAAAACCTTCCTATTAATAAATCCCGGGGGGGTTTTGTTTTCCGCATGCTCTGTCATGCTTCGAAAGTTGGGTGTGTTATTGGAAAAGGTGGGGCTATAGTATCGCAAATACGTCAAAAAGCTGGTGTGAAGGTCAGAGTAGAGGAAACTGTATCTGGATGCGATGAGAGAATTGTTGTTATTTCTGAGTCTGATCGAGAGAATGAGGTTGAAGCTGAGCAGGGCAAGGATGAGGACACCAAAGACGAAAATGTGGAAGAAAATAATGAAGAGGAAAAGGAGGCTGATGGGAATGAACAGAGCAAGAATGAGAAAGAAAAGGATCCTGTTCCCAAGGACAATGCTGGATTTGGAGAAGGAATTCCATCTGTGCAGAAGGCATTGTTACTGGTTTTTGAGAGAATGGTTGCTGGGGAACCCGGGCCGGAGGGAGGGGATGAAGGTGATGAGTCATCTACGTTTGTGCTCAGATTACTTGTGTTTTCCAATCAAGTTGGGTGTATTTTGGGAAAAGGTGGCAGCGTGATCAAGCAAATGTCATCTGACAGTGGTGCCCAGATCCGGATTCTCCCTAGGGACAAACTTCCTTCTTGTGCAGCAGCCTCTGATGAACTAGTTCAGATCAGTGGGGGAGTTGAAGCAGTTAGGAAAGCTCTTCAATCTGTTTCTCAGCAACTCTTGGATAATCCTCCGCGTGATAATGATCATTTTTCTGCCAACACCACTGTGCAATCATCTCATTCATTTTGGCAGCCTCCTTCTAAGACAGAAGGACGCCCACTGAATTATCACTCTTTTTCTTCTCAAGGAGTACCCTGTTCTGGACCTCCTCTGGCCCATAAGTATTATGAAAGTGGTGGTCCAGGTCAAATGAAGCCTCCTATTGAAATACTAAGCTTCCGTTTGTTGTGTCCTGATGAGAGGGCAGGAGGTGTAATTGGAAAGGGAGGAACCATAATAAAGTCACTTAAGCAAGAAACAGGCTGTGAAATCAAAGTTATGGAAGCTGTCCCTGACTCAGAAGACCGCATTATCATCATCTCTGGCCCTGCGCACCCAGAAGATAGAATATCAGTTGTGCAAGATGCCATTCTTCGTGTACAGAGTAGGATATTCCGAGCTATACCTGATAGTAAGGAGCAGAGCGTACTGGCTAGGCTTCTAGTTTCATCCAATCAAATTGGTTGTCTCCTGGGAAAGGGTGGCTCAATCATAGCTGAAATGAGAAAGTCATCTGGTGCACATATTCGTATACTTGGGAAAGATCAGGTTCCAAAGTGTGCTAAAGCAGATGAAGAAGTAGTTCAGATAAATGGAGATTTTGAAGCAGTTCAGGAAGCTATATTGCAGATAACTACTAGATTGCAGCATCATTTTTTCCGTGATCTATTTCCTTCCATTAATTATCCTACAAATCCAGCATTTTCGGATCAAGTACCTGTATTTTCATCTTATGGGGTAAGGAGAGAATTCTCACCTCAGGGAAGATATTCAAATTTAGGTCCCTCCTTTCACATTGATGGCGGTTTGCATCCTCATGATGATCGAACACCTTTCATGCACGAGATTCATAGGCCAGGTGCTCCACCTCATATATCTGACAGAAAACCATGGGGTTCCCGGGGATTAGTTGATGGTGGTGGATCACTAGGCTTGCCTGACTTTGCAGGAGCCCCACATAGAAGAAACGCTGGGTTTGGAGGAGGAAACCAACCACCTATTATTACAAGCACCACCATCGAGGTTTTTGTTCCTCATAACATTGTTCCTGTAATTTATGGAGAGGATGGTGAATGTTTGAAGCAAATTCGTCAGATATCTGATGCAAGAATCACAATTACCGAGCCAAAGCCAGAAGCAGTTGAAACTGTAATCATAATTTCTGGAACACCTGAACAAACGCATGCTGCACAGAGTCTTATCCAAGCATTTGTAATGAGTGAGACCGAGTCCAGTTGA 2121 43.75 MNVIGLYLIILSSSRYIADMSAPSTPSKRPLDENCTESDENGKSKRQKPTGSHSQNLPINKSRGGFVFRMLCHASKVGCVIGKGGAIVSQIRQKAGVKVRVEETVSGCDERIVVISESDRENEVEAEQGKDEDTKDENVEENNEEEKEADGNEQSKNEKEKDPVPKDNAGFGEGIPSVQKALLLVFERMVAGEPGPEGGDEGDESSTFVLRLLVFSNQVGCILGKGGSVIKQMSSDSGAQIRILPRDKLPSCAAASDELVQISGGVEAVRKALQSVSQQLLDNPPRDNDHFSANTTVQSSHSFWQPPSKTEGRPLNYHSFSSQGVPCSGPPLAHKYYESGGPGQMKPPIEILSFRLLCPDERAGGVIGKGGTIIKSLKQETGCEIKVMEAVPDSEDRIIIISGPAHPEDRISVVQDAILRVQSRIFRAIPDSKEQSVLARLLVSSNQIGCLLGKGGSIIAEMRKSSGAHIRILGKDQVPKCAKADEEVVQINGDFEAVQEAILQITTRLQHHFFRDLFPSINYPTNPAFSDQVPVFSSYGVRREFSPQGRYSNLGPSFHIDGGLHPHDDRTPFMHEIHRPGAPPHISDRKPWGSRGLVDGGGSLGLPDFAGAPHRRNAGFGGGNQPPIITSTTIEVFVPHNIVPVIYGEDGECLKQIRQISDARITITEPKPEAVETVIIISGTPEQTHAAQSLIQAFVMSETESS 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10405265 10411488 + Conep04aG0131000.1 Cone4ag1264 436242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1264 706 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 57 116 IPR036612 GO:0003723(InterPro)
Cone4ag1264 706 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 631 700 IPR036612 GO:0003723(InterPro)
Cone4ag1264 706 CDD KH-I_PEPPER_rpt1_like 66 123 - -
Cone4ag1264 706 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 341 412 IPR036612 GO:0003723(InterPro)
Cone4ag1264 706 MobiDBLite consensus disorder prediction 32 47 - -
Cone4ag1264 706 CDD KH-I_PEPPER_rpt2_like 209 280 - -
Cone4ag1264 706 Gene3D K Homology domain, type 1 433 513 IPR036612 GO:0003723(InterPro)
Cone4ag1264 706 Gene3D K Homology domain, type 1 204 284 IPR036612 GO:0003723(InterPro)
Cone4ag1264 706 ProSiteProfiles Type-1 KH domain profile. 65 125 - -
Cone4ag1264 706 ProSiteProfiles Type-1 KH domain profile. 207 276 - -
Cone4ag1264 706 Pfam KH domain 210 276 IPR004088 GO:0003723(InterPro)
Cone4ag1264 706 Pfam KH domain 68 122 IPR004088 GO:0003723(InterPro)
Cone4ag1264 706 Pfam KH domain 633 696 IPR004088 GO:0003723(InterPro)
Cone4ag1264 706 Pfam KH domain 354 405 IPR004088 GO:0003723(InterPro)
Cone4ag1264 706 Pfam KH domain 440 505 IPR004088 GO:0003723(InterPro)
Cone4ag1264 706 ProSiteProfiles Type-1 KH domain profile. 631 695 - -
Cone4ag1264 706 CDD KH-I_PEPPER_rpt1_like 354 419 - -
Cone4ag1264 706 MobiDBLite consensus disorder prediction 149 167 - -
Cone4ag1264 706 Gene3D K Homology domain, type 1 352 427 IPR036612 GO:0003723(InterPro)
Cone4ag1264 706 Gene3D K Homology domain, type 1 66 128 IPR036612 GO:0003723(InterPro)
Cone4ag1264 706 Gene3D K Homology domain, type 1 630 703 IPR036612 GO:0003723(InterPro)
Cone4ag1264 706 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 431 517 IPR036612 GO:0003723(InterPro)
Cone4ag1264 706 CDD KH-I_PEPPER_rpt2_like 438 510 - -
Cone4ag1264 706 MobiDBLite consensus disorder prediction 114 136 - -
Cone4ag1264 706 ProSiteProfiles Type-1 KH domain profile. 351 418 - -
Cone4ag1264 706 MobiDBLite consensus disorder prediction 21 59 - -
Cone4ag1264 706 Coils Coil 142 162 - -
Cone4ag1264 706 SMART kh_6 435 510 IPR004087 GO:0003676(InterPro)
Cone4ag1264 706 SMART kh_6 64 135 IPR004087 GO:0003676(InterPro)
Cone4ag1264 706 SMART kh_6 630 700 IPR004087 GO:0003676(InterPro)
Cone4ag1264 706 SMART kh_6 206 281 IPR004087 GO:0003676(InterPro)
Cone4ag1264 706 SMART kh_6 350 423 IPR004087 GO:0003676(InterPro)
Cone4ag1264 706 ProSiteProfiles Type-1 KH domain profile. 436 505 - -
Cone4ag1264 706 MobiDBLite consensus disorder prediction 114 174 - -
Cone4ag1264 706 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 199 284 IPR036612 GO:0003723(InterPro)
Cone4ag1264 706 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 346 697 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1264 K21444 - - vvi:100267715 863.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0199 Cone-Chr2:1047414 Cone4ag1264 Cone-Chr4:10405265 6.59E-67 dispersed
Cone4ag1264 Cone-Chr4:10405265 Cone8ag1030 Cone-Chr8:9536163 3.22E-106 dispersed
Cone4ag1264 Cone-Chr4:10405265 Cone7ag0879 Cone-Chr7:6840483 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35