Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1266 ATGCATCTCTTTCCAAAGAAGATGGCTCTTCCATGTTCAATCTTCTTCATCTTCATCTTCCTCCATCTTCTCTCCCTCATTTCCCTTTCCTTTTCCTCTACTTACAGTGCTCACAACAACCAATCTCAGTTCTTCTCCCTCATGCAGAAAACTCTCTCCGGATCACTTTTGTCCGATTGGCATTTTACTGACCGAAAATCGTTTTGCAATTTCACCGGCATCACCTGCGACGACAACCAAAGCGTCATTGGATTCGACCTCTCCGGCTGGTCCCTGTCTGGAACCTTCCCACCAAATGTATGCACATACCTTCCGGAGCTCCGGGTTCTCCGTCTCGGACGAAGCGGTGTACATGGCACCTTCCCTCAAGGCATCACCAATTGCTCTCATTTAGAAGAACTCGACTTGAGCTTCCTCTACCTCACAGGACCGATCCCCGACTTATCGACGATGATGTCATCACTCCGTATCCTCGACCTCTCCTACAACCACTTCACCGGTGAGTTTCCCATCTCTGTCTTCCGTCTGATCAACCTCGAGATTCTTAATTTTAATGAAGACGACAACTTGAACTTGTGGGAGTTGCCGGAGAATATCTCCGGCATGACGAAGCTCAGGTCGATGATCTTGACTACGTGCATGGTACGCGGCCCGATCCCGAAATCAATTGGAAAGATGGCGTCACTAGTTGACCTTGAGCTAAGCGGAAACTACCTAACCGGTCAAATCCCGAAAGAAATCGGGTTGTGCAAAAACCTCAGACAGCTCGAACTCTACTATAACCAACTTGTCGGAACCATTCCGGAAGAGCTCGGGAACCTGACCGAGCTTGTTGAGCTCGACATGTCGGTTAATCAATTGACCGGGACCATTCCGGAATCGATCTGCCGTCTTCCGAAGCTCGCAGTCTTCCAGCTTTATAATAACAGCTTGACAGGTGAGATTCCGGATGCGATCGCGGAGTCAACTACTCTCACCATGCTGTCACTTTACGATAACTCGTTGACTGGACAAGTTCCGAGAAGTTTGGGGCACTTATCTCCCCTGAACGTTCTCGACTTGTCGGAAAATCACCTCTCGGGCCCGCTTCCAACAGATGTTTGCCAGCAAGGCAAATTGCAGTACTTCCTCGTCCTGGATAACGAGTTTACAGGGCAGATTCCGGAATCATATTCAAACTGCAGGTCGCTTTTACGGTTCCGGGTAAGTTCGAACCGGTTAACCGGACCGGTGGCCGAAGGCATTCTCGGGCTACCTAGAGTCTCGATCATTGACCTCGGAAACAACGATTTGACAGGTCAACTTCCGAGTTCTTTCTCAACAGCCCGGAACTTGTCAGAATTGTTCATGCAAAGCAACAGAATCTCAGGTGATCTTCCTTCCGGAATCTCTAAAGCGACGAGCTTGGTGAAAATCGATTTAAGTAAGAATCTTCTAACCGGTCCGATACCTTGGGAAATAGGCAACCTCAAGAAGCTGAACTTACTTCTTCTACAAGGCAACAAGCTTAACTCTTCAATCCCAAGTTCACTCTCGTCCCTTAAATCCCTCAACGTTCTAGACCTTTCCGAAAATCTTCTAACTGGAAACATCCCTGAATGTCTCTCCGAATTGCTTCCCAACTCGATCAACTTCTCGAACAATCAACTCTGCGGTCCAATCCCGCCGTCGCTAATCAAAGGAGGACTGATCGAGAGTTTTTCTGGGAATCCGAGGCTCTGCGTTTCTGTAACTCTAACCAATTCATCAGACCATAACTTCCCGCCCTGCCAGAAAACTTCTGCCCGGAAAAGACGAAACTCCTACTGGGCAATCGCTATATCGGCCGCAATCATCTTCATAGCGGGCCTGATCTTCCTTAAACGCAAGTTTGATAAACGAAAAACCGAGCAGGATTCGGTAGACCAAATGACATCCTCTTCCATATTCTCGTACGATGTGAAGAGCTTTCATAGAAACAGCTTTGACCAGAGAGAGATAATCAACGCCATGGGAGAGAAGAACCAGGTGGGGAAAGGAGGGTCAGGAACAGTCTACAAAATTGAGCTGAAAAGCGGAGAGATCGTAGCCGTTAAACGTCTTCATAACCGGAGAACAAAAGATCTAACCCCTGAAGATCAAATAGGTCTAGACAAAGAGTTGAAAACAGAGGTGGAAACACTTGGAAGCATAAGGCACAAGAACATAGTGAAGTTGTACTGTTACTTTACCAATCTGGATTTCAGTCTTTTGGTCTATGAATTCATGCCGAACGGAAATCTGTGGGATGCGCTCCGGTCCGGATGGGTCCATTTGGATTGGCCGATAAGGCATCAGATAGGGCTAGGTGTCGCTCAAGGATTGGCTTATCTCCATCACGACTTGTTTCCTCCAATCATTCATAGAGACATCAAAAGTACCAACATACTGCTTGATGTGAATTACCAGCCAAAAGTTTCCGATTTCGGAATTGCTAAGGTTTTACAAGCCCGGGCCGGAAAGGATTGCACCACTACCGTTATTGCCGGTACTTACGGTTATTTGGCCCCAGAATATGCATATTGTTCTAAGGCTACGACAAAGTGTGATGTGTACAGTTACGGAGTGGTGCTGATGGAACTGATAACGGGGAAGAAGCCAGTCGAGGCCGAGTTCGGCGAGAACAAGAACATAACCTATTGGGTTTCGAGCAAAGTGGATACTAAGGAGGGGGCTATGGAGGTTTTGGACCAGAGATTGTCGGGTTCTTATTGGGACAAAATAATTCAAGCGTTGCGGATAGCGATTTGCTGCACGTATAAGAATCCGGCGCTTCGTCCCACCATGAAAGAAGTGGTCCAGTTGCTCATTGAAGCTGACCCTTGTAGATTCCACCATTCTCATTGCAATAACATGGTGACTAAAGACAACATGACTAAAGTAAAGAACCCCATTTGA 2916 47.22 MHLFPKKMALPCSIFFIFIFLHLLSLISLSFSSTYSAHNNQSQFFSLMQKTLSGSLLSDWHFTDRKSFCNFTGITCDDNQSVIGFDLSGWSLSGTFPPNVCTYLPELRVLRLGRSGVHGTFPQGITNCSHLEELDLSFLYLTGPIPDLSTMMSSLRILDLSYNHFTGEFPISVFRLINLEILNFNEDDNLNLWELPENISGMTKLRSMILTTCMVRGPIPKSIGKMASLVDLELSGNYLTGQIPKEIGLCKNLRQLELYYNQLVGTIPEELGNLTELVELDMSVNQLTGTIPESICRLPKLAVFQLYNNSLTGEIPDAIAESTTLTMLSLYDNSLTGQVPRSLGHLSPLNVLDLSENHLSGPLPTDVCQQGKLQYFLVLDNEFTGQIPESYSNCRSLLRFRVSSNRLTGPVAEGILGLPRVSIIDLGNNDLTGQLPSSFSTARNLSELFMQSNRISGDLPSGISKATSLVKIDLSKNLLTGPIPWEIGNLKKLNLLLLQGNKLNSSIPSSLSSLKSLNVLDLSENLLTGNIPECLSELLPNSINFSNNQLCGPIPPSLIKGGLIESFSGNPRLCVSVTLTNSSDHNFPPCQKTSARKRRNSYWAIAISAAIIFIAGLIFLKRKFDKRKTEQDSVDQMTSSSIFSYDVKSFHRNSFDQREIINAMGEKNQVGKGGSGTVYKIELKSGEIVAVKRLHNRRTKDLTPEDQIGLDKELKTEVETLGSIRHKNIVKLYCYFTNLDFSLLVYEFMPNGNLWDALRSGWVHLDWPIRHQIGLGVAQGLAYLHHDLFPPIIHRDIKSTNILLDVNYQPKVSDFGIAKVLQARAGKDCTTTVIAGTYGYLAPEYAYCSKATTKCDVYSYGVVLMELITGKKPVEAEFGENKNITYWVSSKVDTKEGAMEVLDQRLSGSYWDKIIQALRIAICCTYKNPALRPTMKEVVQLLIEADPCRFHHSHCNNMVTKDNMTKVKNPI 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10422660 10426023 - Conep04aG0131200.1 Cone4ag1266 436244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1266 971 SUPERFAMILY L domain-like 189 416 - -
Cone4ag1266 971 Pfam Protein kinase domain 667 940 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1266 971 FunFam Leucine-rich repeat receptor-like protein kinase 192 294 - -
Cone4ag1266 971 FunFam receptor protein-tyrosine kinase CEPR1 647 748 - -
Cone4ag1266 971 Gene3D Transferase(Phosphotransferase) domain 1 749 963 - -
Cone4ag1266 971 SUPERFAMILY L domain-like 371 556 - -
Cone4ag1266 971 SMART serkin_6 664 949 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1266 971 SMART LRR_typ_2 514 538 IPR003591 -
Cone4ag1266 971 SMART LRR_typ_2 346 370 IPR003591 -
Cone4ag1266 971 SMART LRR_typ_2 152 176 IPR003591 -
Cone4ag1266 971 SMART LRR_typ_2 226 250 IPR003591 -
Cone4ag1266 971 SMART LRR_typ_2 274 298 IPR003591 -
Cone4ag1266 971 Gene3D Ribonuclease Inhibitor 304 585 IPR032675 -
Cone4ag1266 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1266 971 FunFam Receptor protein-tyrosine kinase CEPR1 298 584 - -
Cone4ag1266 971 SUPERFAMILY Protein kinase-like (PK-like) 645 942 IPR011009 -
Cone4ag1266 971 Gene3D Phosphorylase Kinase; domain 1 646 748 - -
Cone4ag1266 971 Gene3D Ribonuclease Inhibitor 41 190 IPR032675 -
Cone4ag1266 971 Gene3D Ribonuclease Inhibitor 191 295 IPR032675 -
Cone4ag1266 971 Pfam Leucine Rich Repeat 154 174 IPR001611 GO:0005515(InterPro)
Cone4ag1266 971 Pfam Leucine Rich Repeat 516 538 IPR001611 GO:0005515(InterPro)
Cone4ag1266 971 Pfam Leucine Rich Repeat 325 346 IPR001611 GO:0005515(InterPro)
Cone4ag1266 971 Pfam Leucine Rich Repeat 349 368 IPR001611 GO:0005515(InterPro)
Cone4ag1266 971 Pfam Leucine Rich Repeat 468 490 IPR001611 GO:0005515(InterPro)
Cone4ag1266 971 Pfam Leucine Rich Repeat 277 298 IPR001611 GO:0005515(InterPro)
Cone4ag1266 971 Pfam Leucine Rich Repeat 228 248 IPR001611 GO:0005515(InterPro)
Cone4ag1266 971 Pfam Leucine Rich Repeat 252 274 IPR001611 GO:0005515(InterPro)
Cone4ag1266 971 ProSitePatterns Protein kinases ATP-binding region signature. 670 692 IPR017441 GO:0005524(InterPro)
Cone4ag1266 971 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 464 IPR050647 -
Cone4ag1266 971 SUPERFAMILY L domain-like 64 244 - -
Cone4ag1266 971 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 749 960 - -
Cone4ag1266 971 ProSiteProfiles Protein kinase domain profile. 664 949 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1266 Cone-Chr4:10422660 Cone7ag0878 Cone-Chr7:6807374 0 dispersed
Cone4ag1266 Cone-Chr4:10422660 Cone4ag1267 Cone-Chr4:10427416 1.36E-93 tandem
Cone14ag0207 Cone-Chr14:950468 Cone4ag1266 Cone-Chr4:10422660 2.59E-69 wgd
Cone17ag1151 Cone-Chr17:8480964 Cone4ag1266 Cone-Chr4:10422660 4.09E-235 wgd
Cone20ag0577 Cone-Chr20:3317756 Cone4ag1266 Cone-Chr4:10422660 3.15E-65 wgd
Cone4ag1266 Cone-Chr4:10422660 Cone5ag0565 Cone-Chr5:2414973 1.96E-38 wgd
Cone4ag1266 Cone-Chr4:10422660 Cone6ag1492 Cone-Chr6:11817691 4.08E-70 wgd
Cone4ag1266 Cone-Chr4:10422660 Cone7ag0877 Cone-Chr7:6792849 5.11E-92 wgd
Cone4ag1266 Cone-Chr4:10422660 Cone8ag0188 Cone-Chr8:982485 2.67E-67 wgd
Cone4ag1266 Cone-Chr4:10422660 Cone9ag1416 Cone-Chr9:10501865 7.04E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82783 PF02731 SKIP_SNW 8.00E-74 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1266 - - - 0.0