Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1267 ATGCCGCCACCGCCGCCGCATCTTATTCACATCCTCTGTGTTTTCTGCTTACTCTGTACCGTCCAAGCTGACGACTTTCAAATCCTAATCAAACTGAAAACCGCGTTCCAAAATTCAAACTCCGACGACGTGTTCAAATCCTGGATACCCTCTATCTCCGTCTGCAACTTCACCGGAATTGTCTGTAGTTCAGACGGCTCAGTCACTGAAATCGAGCTTTCAAACCAGAAGCTATCCGGATCAATTCCATTCGATTCCATCTGTCAGCTTACGGAATTGGAAAGGCTCTCTCTCGGATACAACTTCCTGTACGGAACAATCGCAGCGGATCTTAAAAACTGTGTCGAGTTGAAGTATCTGGACTTAGGGAACAATTTACTTTCCGGCACGATCCCGGACATTGCTTCTTTGACCAAATTGGAGTATTTGTATTTAAACACGAGCGGATTCTCCGGCACGTTTCCATGGAAATCGTTGACCAACATGACGAGCTTGATTCAACTAAGCATTGGGGATAATCCTTTTGATAGAAGCAATTTCCCTAACGAAGTGCTCAATCTGAAGAAGCTGAACCGGCTTTATTTATCAAATTGCAGTCTCCAAGGTGAAATTCCAGCTGCTATCGGCAACCTAACGGAGCTGATGAACCTAGAGCTCTCTGAAAATTACCTGTCGGGATCTCTTCCGGTTGAGCTCGGAAACCTTCGAAATTTATGGCAGCTTGAGCTCTACAACAATTTATTCAACGGAACGCTTCCAGTCTGTCTGAGAAATCTCACGCGTCTTGAGAACTTCGACGTATCGACGAACTTTCTAGAAGGCGATTTATCGGAGTTGAGATTCTCAACCAATCTGGTTTCTCTACAACTCTTTGAAAACTCGTTGACCGGTCATATTCCCGCGGAATTTGGCGAGTTTAAGCGCCTAACAAATCTCTCTCTGTACACGAATCAACTGACCGGTCCTCTTCCTCAATCGATTGGTTCTTGGGCGAAGTTTAATTTCATCGACGTGTCGGAAAATTTCCTGACCGGTCAAATCCCGCCCGACATGTGTAAAATGGGGACGATGAGGTCCCTTCTTATACTTCAGAACAACTTCACAGGCGAAATTCCGGCAAGTTATGGAAACTGCACCACCTTACGACGGTTCAGAGTGAGCAACAACTCACTCTCCGGCGCTGTTCCCGCCAAAATCTGGGGTTTACCGAACCTTAACATAATCGACCTCGAGTTGAACCAATTAGAAGGGCCAATCACTTCCGACATTCAAAACGCAGTTTCTCTAGCACAACTATTCGCAGCAAACAATCGCTTGAACGGTAATTTACCGGCGGAGATTTCAAAAACAATATCCTTAGTTGCAATAGACTTGAGTTTCAATCAATTCTATGGAGAAATTCCAACCTTAATAGGTTCACTAAACCGCTTAGGGAATCTTCATTTACAGAGCAACAAATTTTCCGGTTCTATACCGGAATCAATCGGCTCATGTACTTTACTAAGTGATCTAAATCTCGGTCAAAATTCACTCTCTGGTGCAATTCCACCATCTCTAGGCTCCTTACTGTCTCTAAACTCCTTAAACTTATCCCGAAATGAGCTTTCCGGTCAAATTCCGAATAGTTTATCATTACTTAAACTAAGCTTGCTTGATCTGTCCAATAACCGATTAACTGGTCTGGTCCCACAATCTTTATCGATCGCAGCATATAATGGTAGCTTTGCAGGAAATCCTGGGCTATGTAGCATGGAAGTAAGCTCTTTCCGGAGGTGCTCGGGGGTACCCGGTCTTCCCCATGCCATTAGAACCCTTGTTATTTGCTTAGTAGTGGGTTCTGTTCTATTAATGATGTCTTTGGTCTTGATTCTCTACTTGAGAAAGGTCGAAAAGGACCGAGAGCGGCACCCAGATCGGGACCGGTCATTAAAGGAAGATACATGGGACTTGAAGTCCTTCCATGTACTAACTTTTACAGAAGATGAGATTCTCGATTCCATTAAAGAAGAGAATCTAATCGGACGAGGAGGATCCGGGAATGTTTACAGAGTGACAGTTGATAATAGCAAAGAGCTAGCCGTGAAGCATATTTGGAACACCGATTTGAAACCCCACAAGAAATCCAAATCCACAACACCGATTCTCTCCGAGCGTGGATCGAAGTCCAAGGAATTTGATGCTGAAGTGGAGACTTTGAGCTCAATCAGGCACGTCAATGTGGTGAAGTTGTATTGCAGCATTACAAGCGAAGATTCCAGCTTGTTGGTGTATGAATATATGCCGAATGGAAGCTTGTGGGACCGGCTTCATAGTAGTACAAAAATGGTGCTTGATTGGGAAACTAGATATGAAATAGCTGTGGGAGCTGCTAAAGGATTGGCGTATCTTCATCATGGGTGTGAAAGACCTGTGATTCACAGAGATGTCAAGTCTAGTAATATATTGTTGGATGAATTCTTGAAGCCTAGGATTGCTGATTTTGGTCTTGCCAAGATTGTTCAGACAAGTAATATGCTCAAGGATTCCGCCCATGTCATTGCTGGTACTCTTGGCTATATCGCTCCCGAATATGGGTACACAAGCAAAGTCAATGAGAAGAGTGACGTGTACAGTTTCGGAGTGGTGCTGATGGAATTGGCGAGTGGAAAGAGGCCCATAGAGCCAGAATTTGGAGACAACAAGGACATTGTGAATTGGGTTTCAAGCAATTTGAAGAGCAAAGAAAGCGTGTTTAGTATAGTGGATTCTAGAATCCCAAATGGGTTCAAGGAAGAAGCAATCAAGGTGTTAAGAATCGCCATTCTCTGCACTGCACGGCTTCCTACTCAGAGACCGGCCATGAGAAGTGTCGTCAAAATGCTCGAAGATGCTGACCCTTGTCGAATCGTGATCAGCAAAGATCAAAGGCTTTCTAACTTCAAGAAGCTTGATTCATGA 2937 44.16 MPPPPPHLIHILCVFCLLCTVQADDFQILIKLKTAFQNSNSDDVFKSWIPSISVCNFTGIVCSSDGSVTEIELSNQKLSGSIPFDSICQLTELERLSLGYNFLYGTIAADLKNCVELKYLDLGNNLLSGTIPDIASLTKLEYLYLNTSGFSGTFPWKSLTNMTSLIQLSIGDNPFDRSNFPNEVLNLKKLNRLYLSNCSLQGEIPAAIGNLTELMNLELSENYLSGSLPVELGNLRNLWQLELYNNLFNGTLPVCLRNLTRLENFDVSTNFLEGDLSELRFSTNLVSLQLFENSLTGHIPAEFGEFKRLTNLSLYTNQLTGPLPQSIGSWAKFNFIDVSENFLTGQIPPDMCKMGTMRSLLILQNNFTGEIPASYGNCTTLRRFRVSNNSLSGAVPAKIWGLPNLNIIDLELNQLEGPITSDIQNAVSLAQLFAANNRLNGNLPAEISKTISLVAIDLSFNQFYGEIPTLIGSLNRLGNLHLQSNKFSGSIPESIGSCTLLSDLNLGQNSLSGAIPPSLGSLLSLNSLNLSRNELSGQIPNSLSLLKLSLLDLSNNRLTGLVPQSLSIAAYNGSFAGNPGLCSMEVSSFRRCSGVPGLPHAIRTLVICLVVGSVLLMMSLVLILYLRKVEKDRERHPDRDRSLKEDTWDLKSFHVLTFTEDEILDSIKEENLIGRGGSGNVYRVTVDNSKELAVKHIWNTDLKPHKKSKSTTPILSERGSKSKEFDAEVETLSSIRHVNVVKLYCSITSEDSSLLVYEYMPNGSLWDRLHSSTKMVLDWETRYEIAVGAAKGLAYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVQTSNMLKDSAHVIAGTLGYIAPEYGYTSKVNEKSDVYSFGVVLMELASGKRPIEPEFGDNKDIVNWVSSNLKSKESVFSIVDSRIPNGFKEEAIKVLRIAILCTARLPTQRPAMRSVVKMLEDADPCRIVISKDQRLSNFKKLDS 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10427416 10430698 - Conep04aG0131300.1 Cone4ag1267 436245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1267 978 Gene3D Transferase(Phosphotransferase) domain 1 760 969 - -
Cone4ag1267 978 Gene3D Phosphorylase Kinase; domain 1 651 759 - -
Cone4ag1267 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1267 978 FunFam Probable inactive receptor kinase RLK902 22 181 - -
Cone4ag1267 978 Pfam Leucine Rich Repeat 117 133 IPR001611 GO:0005515(InterPro)
Cone4ag1267 978 Pfam Leucine Rich Repeat 524 544 IPR001611 GO:0005515(InterPro)
Cone4ag1267 978 Pfam Leucine Rich Repeat 501 522 IPR001611 GO:0005515(InterPro)
Cone4ag1267 978 Pfam Leucine Rich Repeat 479 498 IPR001611 GO:0005515(InterPro)
Cone4ag1267 978 Pfam Leucine Rich Repeat 189 211 IPR001611 GO:0005515(InterPro)
Cone4ag1267 978 Pfam Leucine Rich Repeat 548 566 IPR001611 GO:0005515(InterPro)
Cone4ag1267 978 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 760 972 - -
Cone4ag1267 978 FunFam Leucine-rich receptor-like protein kinase family protein 182 278 - -
Cone4ag1267 978 ProSiteProfiles Protein kinase domain profile. 667 961 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1267 978 SMART serkin_6 667 961 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1267 978 Gene3D Ribonuclease Inhibitor 181 280 IPR032675 -
Cone4ag1267 978 Gene3D Ribonuclease Inhibitor 281 375 IPR032675 -
Cone4ag1267 978 ProSiteProfiles Leucine-rich repeat profile. 116 138 IPR001611 GO:0005515(InterPro)
Cone4ag1267 978 Pfam Protein kinase domain 669 952 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1267 978 FunFam Leucine-rich repeat receptor-like protein kinase TDR 279 594 - -
Cone4ag1267 978 ProSiteProfiles Leucine-rich repeat profile. 524 546 IPR001611 GO:0005515(InterPro)
Cone4ag1267 978 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 956 IPR050647 -
Cone4ag1267 978 Gene3D Ribonuclease Inhibitor 384 484 IPR032675 -
Cone4ag1267 978 Gene3D Ribonuclease Inhibitor 22 180 IPR032675 -
Cone4ag1267 978 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524(InterPro)
Cone4ag1267 978 SUPERFAMILY L domain-like 48 353 - -
Cone4ag1267 978 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Cone4ag1267 978 FunFam Receptor-like protein kinase HAIKU2 650 759 - -
Cone4ag1267 978 SUPERFAMILY Protein kinase-like (PK-like) 659 955 IPR011009 -
Cone4ag1267 978 SUPERFAMILY L domain-like 279 592 - -
Cone4ag1267 978 Gene3D Ribonuclease Inhibitor 485 584 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1267 Cone-Chr4:10427416 Cone7ag0877 Cone-Chr7:6792849 0 dispersed
Cone4ag1266 Cone-Chr4:10422660 Cone4ag1267 Cone-Chr4:10427416 1.36E-93 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82784 PF12895 ANAPC3 2.40E-18 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1267 - - - 0.0