Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1269 ATGGCCATCTCTGATTTGGAGCGCCTAATTAGTTCTAGGCCTCGACCGCCGGCGCAAGCTAGAGTTCCGTTGAGACAGTTACTCCGAGTGACGTCAGTGGCGTGCGGGATTCAATTCGGCTGGGCTTTGCAGCTCTCTCTTCTCACTCCCTACGTGCAGGAGCTGGGGATTCCTCACGCTTGGGCTAGCGTTATCTGGCTTTGTGGCCCGCTATCGGGCCTTTTAGTCCAGCCACTTGTGGGCCACTCCAGCGATCGTTGCACCAGTCGATTTGGTCGCCGGAGGCCATTCATCGTTGCTGGAGCGGCGTTGATCGCCGTCGCCGTTTTGATTATTAGTTTCTCTGCGGATATAGGGTGGTTGCTTGGCGATAGAGGTAATGTTCGGCCAGCTGCGGTGGCGACCTTTGTGTTCGGGTTTTGGATTCTCGATGTTGCTAATAACATGACTCAGGGACCTTGTAGAGCTCTCCTCGCCGACCTTACTGGAAAGGATCATCGAAGGACTCGAGTGGCAAATGCATATTTTTCTCTGTTTATGGCTGTGGGTAATGTTCTGGGCTATGCCACTGGATCCTACAGTGGCTGGTTCAAGATTTTACCATTTACTCTTACATCCGCATGCAATGTTAACTGTGCAAACCTCAAGTCAGCTTTTATTATTGACATTATCTTCATTGCAATTACTACGTATTTGAGCATAACGGCAGCTAAAGAATTACCTCTAGACCCAAATAATAGATCCATGTCGACTGGTGAAGGGCCAGGACAGTCAAGCCATGTTCAAGAAGCTTTTCTTTGGGAGTTGTTTGGGACATTTAGATACTTCTCAGGGTCCATATGGGTAATCTTGTTTGTTGTTGCTCTGACCTGGATTGGGTGGTTTCCATTTCTTCTTTTTGATACTGACTGGATGGGCAGAGAGATTTATGGAGGCAAGCCAAATGATGGCCAGAGTTATAGTACTGGAGTGAGAATGGGTGCACTTGGTCTGATGTTGAACTCTATTGTTCTTGGAATAACTTCATTGCTCATGGAGAAACTCTGCAGAAAGTGGGGCGCTGGTTTTGTTTGGGGTATTTCAAATTTCCTCATGGCTCTTTGCTTTCTTGCAATGCTTGTTGTCACATTTGCTGCAAAAAGTATGGACTACTTGGGTCATAAGCAACCTCCAAGTGGCATTGTGATTGCTGCACTGGTCATTTTTGCAATTCTTGGTGTTCCACTGGCAATCACTTATAGTGTCCCATATGCCCTTATTTCCTCACGAATTGAGTCTATTGGACTTGGCCAAGGGCTATCCATGGGTGTATTAAATCTGGCTATAGTAGTCCCACAGGTCATAGTGTCTTTAGGAAGTGGACCTTGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCCTTTGCTGTGGCAGCCCTTGCAGCCTTTGCAAGTGGTATTATTGCCATCTTGGCCATCCCACGCTCGGGTGCTCAGAAATCCAGATCTCGAATTTGA 1497 47.63 MAISDLERLISSRPRPPAQARVPLRQLLRVTSVACGIQFGWALQLSLLTPYVQELGIPHAWASVIWLCGPLSGLLVQPLVGHSSDRCTSRFGRRRPFIVAGAALIAVAVLIISFSADIGWLLGDRGNVRPAAVATFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNVLGYATGSYSGWFKILPFTLTSACNVNCANLKSAFIIDIIFIAITTYLSITAAKELPLDPNNRSMSTGEGPGQSSHVQEAFLWELFGTFRYFSGSIWVILFVVALTWIGWFPFLLFDTDWMGREIYGGKPNDGQSYSTGVRMGALGLMLNSIVLGITSLLMEKLCRKWGAGFVWGISNFLMALCFLAMLVVTFAAKSMDYLGHKQPPSGIVIAALVIFAILGVPLAITYSVPYALISSRIESIGLGQGLSMGVLNLAIVVPQVIVSLGSGPWDQLFGGGNSPAFAVAALAAFASGIIAILAIPRSGAQKSRSRI 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10438174 10442388 + Conep04aG0131500.1 Cone4ag1269 436247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1269 498 PANTHER SUGAR TRANSPORTER 19 484 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Cone4ag1269 498 NCBIfam sucrose/proton symporter 22 489 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Cone4ag1269 498 Gene3D MFS general substrate transporter like domains 23 485 IPR036259 -
Cone4ag1269 498 Pfam Major Facilitator Superfamily 33 443 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cone4ag1269 498 CDD MFS_SLC45_SUC 27 484 - -
Cone4ag1269 498 FunFam Sucrose transport protein 21 486 - -
Cone4ag1269 498 SUPERFAMILY MFS general substrate transporter 25 489 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1269 K15378 - - vvi:100232844 785.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0751 Cone-Chr17:5602000 Cone4ag1269 Cone-Chr4:10438174 1.05E-09 dispersed
Cone4ag1269 Cone-Chr4:10438174 Cone6ag0603 Cone-Chr6:2956879 9.92E-151 dispersed
Cone4ag1269 Cone-Chr4:10438174 Cone20ag0693 Cone-Chr20:4349018 2.32E-169 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone20ag0693 . 18 487 Sucrose Transporter Gene Family AT1G22710 66.1 6.8e-185 644.4
Cone4ag1269 . 24 487 Sucrose Transporter Gene Family AT1G22710 55.7 1.2e-149 527.3
Cone20ag0693 . 19 484 Sucrose Transporter Gene Family AT2G14670 64.9 4.3e-176 615.1
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT2G14670 53.8 9.9e-141 497.7
Cone20ag0693 . 19 414 Sucrose Transporter Gene Family AT1G66570 63.2 1.0e-147 520.8
Cone4ag1269 . 23 415 Sucrose Transporter Gene Family AT1G66570 52.7 1.0e-115 414.5
Cone6ag0603 . 155 611 Sucrose Transporter Gene Family AT2G02860 70.7 1.1e-186 650.2
Cone9ag0608 . 183 639 Sucrose Transporter Gene Family AT2G02860 69.8 1.1e-184 643.7
Cone20ag0693 . 18 484 Sucrose Transporter Gene Family AT5G06170 62.6 2.6e-165 579.3
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT5G06170 51.6 3.4e-133 472.6
Cone20ag0693 . 19 484 Sucrose Transporter Gene Family AT5G43610 64.2 7.5e-173 604.4
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT5G43610 52.7 3.0e-137 486.1
Cone4ag1269 . 11 493 Sucrose Transporter Gene Family AT1G09960 74.2 7.2e-211 730.7
Cone20ag0693 . 21 489 Sucrose Transporter Gene Family AT1G09960 52.5 7.6e-136 481.5
Cone20ag0693 . 18 500 Sucrose Transporter Gene Family AT1G71880 62.1 1.7e-175 613.2
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT1G71880 55.3 2.3e-140 496.5
Cone20ag0693 . 18 487 Sucrose Transporter Gene Family AT1G71890 60.3 3.8e-167 585.5
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT1G71890 50.9 1.0e-132 471.1
Cone20ag0693 . 18 500 Sucrose Transporter Gene Family AT1G71880 62.1 1.7e-175 613.2
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT1G71880 55.3 2.3e-140 496.5
Cone20ag0693 . 18 487 Sucrose Transporter Gene Family AT1G22710 66.1 6.8e-185 644.4
Cone4ag1269 . 24 487 Sucrose Transporter Gene Family AT1G22710 55.7 1.2e-149 527.3
Cone6ag0603 . 155 611 Sucrose Transporter Gene Family AT2G02860 70.7 1.1e-186 650.2
Cone9ag0608 . 183 639 Sucrose Transporter Gene Family AT2G02860 69.8 1.1e-184 643.7
Cone4ag1269 . 11 493 Sucrose Transporter Gene Family AT1G09960 74.2 7.2e-211 730.7
Cone20ag0693 . 21 489 Sucrose Transporter Gene Family AT1G09960 52.5 7.6e-136 481.5
Cone20ag0693 . 18 487 Sucrose Transporter Gene Family AT1G71890 60.3 3.8e-167 585.5
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT1G71890 50.9 1.0e-132 471.1
Cone20ag0693 . 19 484 Sucrose Transporter Gene Family AT5G43610 64.2 7.5e-173 604.4
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT5G43610 52.7 3.0e-137 486.1
Cone20ag0693 . 19 414 Sucrose Transporter Gene Family AT1G66570 63.2 1.0e-147 520.8
Cone4ag1269 . 23 415 Sucrose Transporter Gene Family AT1G66570 52.7 1.0e-115 414.5
Cone20ag0693 . 19 484 Sucrose Transporter Gene Family AT2G14670 64.9 4.3e-176 615.1
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT2G14670 53.8 9.9e-141 497.7
Cone20ag0693 . 18 484 Sucrose Transporter Gene Family AT5G06170 62.6 2.6e-165 579.3
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT5G06170 51.6 3.4e-133 472.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30