Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1271 ATGGCCGGAACGTCCAGAGACAGAGCACTGTCTCTTCTCGCTGCTGCTAACAACCATGGCGATTTAGCTGTCAAGGTGTCTTCTTTGAAGCAGGTTAGGGATATTTTATTGTCAATTGAGCCCTCTGTAGCAGCTGAGCTGTTCCCGTACTTGGTTGAGCTTCAGTCGTCGCCTGAGAGCCTCATTAGAAAAATGCTCATCGAGGTGATTGAAGATATTGGGTTGAAATCTGTGGATAACTCTTCCTTACTAATGTCCGTGTTAGTAGCACTTTTGAAGGACGAAGACTCTTTTGTTGCAAGGCAAGCTGTTAATAGCGGAACAAATATATTTTGCAACGTTTTGGAGGAGATGGCATTACAGTTTTACCGGCGAGGTAGAGTTGAGAGGTGGCTTGAAGAGCTTTGGACGTGGATGCTGAAGTTTAAAGATGTTGTTTTTACGATTGCTTTAGAGCCCACTTCTATTGGGACAAGGTTGCAGGCCCTGAAATCCTTGGAGACATATGTTCTACTTTTTACCTCTGATGTAAATGATTCAGAAAAGTTCTCTGAAGGAAGACGGCAGGCTTTTAACATTTCATGGCTGGCTGGTGGTCACCCTATTCTGGATCAAGTTGTTCTATCGTCGGATGCTAAAAGGACTCTTGCTCTCCTGTTAAATTTTTTGCGGTCTGGTAGTAGTCTACCCGGTGCATTCACAATTACTGTTGTCAATTGTCTAGCAGCCATAGCGAGGAAGAGAACAGTCTACTATAATACTGTTCTGTCTGCACTGCTAGACTTTAATATGAATACAAAATTTGAGACTGTGAAAGGTTTTCATGCTCCTAGTGTCCAGTTTTCCTTAAGAAGTGCCTTTTTGGGATTCCTAAGGTGCCCTCATCCGGACATGGCTGAATCAAAAGAGATGCTGGTAAAGGTTATACGAGAGATGAATTTAGGTGATGCTACAGATCAAGCAATTAAGCAAGTTGAAAAACTGATTAAGGCTACAGACCGTGTTTCACGTGAGGCTTGGTCAGTCAAGGATGATCAACCCTCAAGTCAGCCACCTGTGCTGGTGGATATGTCGAGAAAAAGGTCCACGCCCTTGGATTATGAAGACCTAGCTAGTAATGAGATGGCTTCCAAGCGAGTTCGCTTTGGTAGTGATATCCACTCAACTTCACCATTACAGAAAAATGATTCTATGCCAGATTCTGGTTCCATTAATGGAGGATCTCCTGATATTCCTATATTAAATGGGAAATTGACTCCGGTTGAGCAAATGATTGCAATGATTGGTGCTTTGCTTGCTGAAGGAGAAAGAGGTGCTGACTCACTAAAGATTCTTATTTCAAACATTCATCCTGATGTGTTAGCTGATATCGTCATAACTAATATGAAGCACTTGCCCAAAGCCCCCTCACCTTTGACAAGGCTTGGTGACTTGCCTGTAAATCATCAAGTAAGCAGTCTGATGCAGTCTCCAGCTACAGCTGCTCCGACAAATTCTGTACAGTCTCCGGTTCTTACTGGACAACCATCTTTTTCTATGGCTACCTCAATCAGCTCATCTATGTCTGATGCCGTGGCTATCAATGTTCTTCTGCCCGATTCTAAACGTGATCCACGAAGGGATCCCCGTCGTCTTGATCCTCGGCGTTTAGTGGTGCCATCCATTCCTTCTGTGGAGGAGCCTAGTCCGGTACATACTGAAGTTGATGGCTCTGTTTCCTTGAGTACACCCGCTTCGGTACCTACATCAACAACAGTTGAGAATCCTTCAGAAGCTCTAATGTTGAAAGTCAAAACTGAAGACAGACTTATAGGAAGTCCATTTATATCTGCGCCTGAACAACTAACCCCCAAGGAAGAAGTTCTGGATAGACCTGAAGAAGCCATCCCCATTCTGGAGGTGTATGGCTCTTCAAATCCTGCATTTTCGGCTGTTCAAAAGGTTGAGGAGGAAATCACAGTTGATCTATCTGATGATGCAATAATAAAAGAAGATGATACATCATCTTTTACAGAATTAAGCCAGCATTCTCCATCTGCTTTGAACTCATCTACTCCAGAAGAAACCTGTCAAGAATTACCTCTGCTTCCATCATATCTGGATTTGACCCCAGAACAGCAAACAAACGTGAAAAGATTGGCAGTTGAACGAATTTTTGATTCATGTAAGGATTTATGTGGCACAGATTGTCAGCAGATTCGCCTAGCGTTACTTGCTCGACTGGTTGCTCAGGTTGATGATGATGGCGATGTTGTAGCAATGCTGCAGAAACATGTTGTTGTGGATTACCAACGGCAAAAGGGGCATGAACTTGTTTTGCATGTCTTGTATCATCTCCATTCTCTTACAATTTCGCGGACAGAGGATAGCTCCTCAGTTGCTGCTTCTGTTTATGAAAAGTTCCTCCTAACAGTGGCTAAATCATTGCTGGACTCTTTTCCAGCTTCAGACAAGTCATTGAGTAGACTTCTTGGTGAAGTTCCAGTTTTGCCCGATTCTATGCTGAAACTATTGGATGACCTCTGCTACTCTGATTTTACTGATAACACTGGAAATAATAAACGCGATGTTGAACGTGTAACTCAGGGTCTTGGAACCATCTGGACTTTAATTATGAAGCGTCCACATTATCGATCAACATGCTTAGATATAGCTTTAAAGTGTGCTGTCCATTCACAAGATGAGATACGAGCAACAGCTATCCGTCTGGTGGCAAACAAATTATACCAGTTAAGCTACATTTCAGAAAATATCGAGCAGTATGCAACAAACATGTTGAATTCTGCTGTGGATCTGCATGTTCCAGATGCAGAACCTGGTTCTTCTGAGCAAAGAGCTAAAGGGGAGCTTGAAATCCAGGAAACATCCATTAGTGGTTCTCAAATTTCAGAGCCTGGAACTTCTGAAAATGATTCGCAGAGGGGACTGCCTATAGTCCAAAGCAGTTCAACATTGTCATTTTCTGAAGCTCAAAGATTTATCTCTCTGTTTTTTGCTTTGTGCATCAAGAAACCCAGTCTGCTTCAACTTGTATTTAATGCTTATGGGCGAGCACCTAAAGCCGTGAAACAGGCTGTTCATCGCCATATCCCTATTCTTATAAGGGCCTTAGGGTCATCTTATTCTGAATTACTTGGAATAATATCTGATCCACCACAAGGAAGTGAACATCTCTTGACACTGGTGCTGCAAGTATTGACTCAAGAGACTGTACCTTCCGCTGATCTCATTGCCACTGTTAAACATTTATATGAAACTAAACTGAAGGATGTGACTATTCTCATCCCAATGCTGTCATCACTCTCCAAAAATGAGGTTTTACCTATTTTCCCTCGCCTTGTTGAACTTCCATTGGACAAGTTCCAGAGGGCCCTGGCTCACATACTGCAGGGTTCAGCTCATACTGGCCCTGCCTTAACGCCTGCAGAAGTATTGGTTGCCATCCATGGAATTGTTCCTGAGAAAGATGGTGTTGCGCTAAAAAAGGTAATGGATGCTTGCTCTACTTGTTTTGAGCAACGCACTGTTTTCACACAGCAGGTCTTGGCAAAAGCCTTGAACTACATGGTCGATCAAACTCCTCTCCCTTTGCTCTTCATGCGAACTGTTATACAGGCAATCGATGCTTTTCCAACGCTGGTTGATTTTGTTATGGAGATATTTTCCAAACTTGTTAGTAAACAGGTGTGGAGAATGCCGAAGTTGTGGTTTGGTTTTCTGAAATGCGCGTTTCAGACACAACCACATTCTTTCCAAGTACTGTTAGAGTTGCCGCCACCACAACTTGAAAATGCTTTGAACAAATATGCCACCCTTAGAAGTCCTCTAGCTGCCTATGCTAGCCAGCCAAGTATAAAATCTACACTTTCCAGACCGACACTTGCAGTTCTGGGTCTTGAAAAAGAAGCTAATAATAATATACTGCAGCAACCACACCGAGTGTTGACTTCGCATTCTTCAGATGCTTGTTCATCTGTTGGCGGTTCGACTCTTACGTGA 3999 43.01 MAGTSRDRALSLLAAANNHGDLAVKVSSLKQVRDILLSIEPSVAAELFPYLVELQSSPESLIRKMLIEVIEDIGLKSVDNSSLLMSVLVALLKDEDSFVARQAVNSGTNIFCNVLEEMALQFYRRGRVERWLEELWTWMLKFKDVVFTIALEPTSIGTRLQALKSLETYVLLFTSDVNDSEKFSEGRRQAFNISWLAGGHPILDQVVLSSDAKRTLALLLNFLRSGSSLPGAFTITVVNCLAAIARKRTVYYNTVLSALLDFNMNTKFETVKGFHAPSVQFSLRSAFLGFLRCPHPDMAESKEMLVKVIREMNLGDATDQAIKQVEKLIKATDRVSREAWSVKDDQPSSQPPVLVDMSRKRSTPLDYEDLASNEMASKRVRFGSDIHSTSPLQKNDSMPDSGSINGGSPDIPILNGKLTPVEQMIAMIGALLAEGERGADSLKILISNIHPDVLADIVITNMKHLPKAPSPLTRLGDLPVNHQVSSLMQSPATAAPTNSVQSPVLTGQPSFSMATSISSSMSDAVAINVLLPDSKRDPRRDPRRLDPRRLVVPSIPSVEEPSPVHTEVDGSVSLSTPASVPTSTTVENPSEALMLKVKTEDRLIGSPFISAPEQLTPKEEVLDRPEEAIPILEVYGSSNPAFSAVQKVEEEITVDLSDDAIIKEDDTSSFTELSQHSPSALNSSTPEETCQELPLLPSYLDLTPEQQTNVKRLAVERIFDSCKDLCGTDCQQIRLALLARLVAQVDDDGDVVAMLQKHVVVDYQRQKGHELVLHVLYHLHSLTISRTEDSSSVAASVYEKFLLTVAKSLLDSFPASDKSLSRLLGEVPVLPDSMLKLLDDLCYSDFTDNTGNNKRDVERVTQGLGTIWTLIMKRPHYRSTCLDIALKCAVHSQDEIRATAIRLVANKLYQLSYISENIEQYATNMLNSAVDLHVPDAEPGSSEQRAKGELEIQETSISGSQISEPGTSENDSQRGLPIVQSSSTLSFSEAQRFISLFFALCIKKPSLLQLVFNAYGRAPKAVKQAVHRHIPILIRALGSSYSELLGIISDPPQGSEHLLTLVLQVLTQETVPSADLIATVKHLYETKLKDVTILIPMLSSLSKNEVLPIFPRLVELPLDKFQRALAHILQGSAHTGPALTPAEVLVAIHGIVPEKDGVALKKVMDACSTCFEQRTVFTQQVLAKALNYMVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEIFSKLVSKQVWRMPKLWFGFLKCAFQTQPHSFQVLLELPPPQLENALNKYATLRSPLAAYASQPSIKSTLSRPTLAVLGLEKEANNNILQQPHRVLTSHSSDACSSVGGSTLT 1332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10444764 10458787 - Conep04aG0131700.1 Cone4ag1271 436249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1271 1332 Pfam Symplekin tight junction protein C terminal 1090 1268 IPR022075 -
Cone4ag1271 1332 MobiDBLite consensus disorder prediction 671 687 - -
Cone4ag1271 1332 MobiDBLite consensus disorder prediction 533 548 - -
Cone4ag1271 1332 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 2 1330 - -
Cone4ag1271 1332 SUPERFAMILY ARM repeat 18 1224 IPR016024 -
Cone4ag1271 1332 MobiDBLite consensus disorder prediction 383 404 - -
Cone4ag1271 1332 MobiDBLite consensus disorder prediction 954 975 - -
Cone4ag1271 1332 MobiDBLite consensus disorder prediction 339 370 - -
Cone4ag1271 1332 MobiDBLite consensus disorder prediction 668 687 - -
Cone4ag1271 1332 Pfam Symplekin/PTA1 N-terminal 98 311 IPR032460 -
Cone4ag1271 1332 MobiDBLite consensus disorder prediction 568 586 - -
Cone4ag1271 1332 MobiDBLite consensus disorder prediction 342 356 - -
Cone4ag1271 1332 MobiDBLite consensus disorder prediction 383 407 - -
Cone4ag1271 1332 MobiDBLite consensus disorder prediction 533 586 - -
Cone4ag1271 1332 Gene3D - 1 340 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1271 K06100 - - rcu:8288069 1548.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0424 Cone-Chr3:2076774 Cone4ag1271 Cone-Chr4:10444764 1.01E-09 dispersed
Cone3ag0425 Cone-Chr3:2078631 Cone4ag1271 Cone-Chr4:10444764 1.56E-11 dispersed
Cone4ag1271 Cone-Chr4:10444764 Cone10ag0387 Cone-Chr10:1825020 4.37E-231 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g566 . . . . . . . . . . . Cma09g00609 . . . Cpe06g00470 . . . . . . . . . . . . . . . Cone4ag1271 . . . Lsi04g02305 Csa03g04524 . . . . . . . . . . . . Cmo09g00597 . . . Car09g00540 . Cpe02g00494 Bhi09g02542 Tan01g3889 . . . . . Cla11g01454 Cam11g1507 Cec11g1545 Cco11g1540 Clacu11g1672 Cmu11g1488 Cre11g1908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40