Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1273 ATGGCTGTATCAACCAGATTCGCTGCAGGAAAAATGGAGGCAATGTTATTGAAATCTGCATCTTCATTGAGGACCTCGCATTCTTCTCAGCTTCCGATTGTTTACATGCCCATGAAGAGCAGGAAAACCCTAATTCTGAGAGAGAGGATGCTTGATTCGGACCTGGTGAGGTGCGAGGTTGGGGCTTCGGATGTTTCGGTTCAGAGCGAAGGCGGGAACGGTCAGAGTAACGCTTCTTCCAATATCTCAGCGCTTGAACAGCTCAAGACCTCTGCTGCCGATAGATATACTAAGGAGAGGAGCAGTATTGTGGTGATTGGGCTCAGGGTTCAAACTACACCAGTCGAAATGCGTGAAAAACTTGCCATTCCGGAAGCAGAGTGGCCTCGAGCAATATCAGAGCTGTGCAGCCTAAATCATATAGAAGAAGCAGCCCTTCTTAGCACCTGCAACAGGATGGAGATATATGTTCTAGCCTTATCTCAACATCGTGGGGTGAAAGAAGTGACTGAATGGATGTCAAAGACAAGTGGGCTTCCAGTTTCAGAAATTTGCCAGCACCGGTTTTTGCTGTATAACAAAGATGCCACTCGACATCTCTTTGAAGTATCAGCTGGTCTTGACTCTCTTGTTTTAGGAGAAGGTCAAATCCTTGCTCAGGTCAAGCAAGTTGTAAAAGTTGGTCAAGGGGTGGTTGGATTTGGTAGGAACATAAGTGGGTTGTTCAAGCACGCAATCACAGTAGGAAAGCAGGTCAGGACTGAAACAAACATATCTTCTGGTGCAGTTTCCGTAAGCTCAGCTGCTGTGGAGTTGGCCTTGGTGAAGCTTCCAGAAAGTTCCCACGCCAGTTGTAGAATATTGGTAATTGGAGCAGGGAAAATGGGAAAACTTGTTATCAAGCATTTAGTTGCTAAAGGTTGCAAAAAAATGGTGGTTGTGAACAGAACCCAAGAGAGAGTTGCAGCTATCTCTGAGGAGCTAAACGGCATAGAGATCATTTACAAGCCTCTCAATGAAATGCTAGATTGTGCAGCTGAAGCAAATGTTATCTTTACAAGCACAGCTTCAGAAAGCCCTTTATTTTTGAAGGACCATGTTAAGGACCTCCCTCCAGTTGATCATGAAAATGGTGGCTCTAGGCTTTTCATTGATATCTCTGTACCTAGAAATGTAGGGTCATGTGTTAATGATCTTGAAAATGTGCGAGTTTTCAATGTCGATGATCTTCAAGAGGTTGTGGCTGCTAATAAGGAAGATAGGCTCAGAAAAGCAATGGAAGCTCAGGCAATTATCACTGAGGAATGTAAGCAATTTGAAGCCTGGAAGGATTCTCTAGAGACGGTTCCTACCATCAAGAAATTGAGGGCATATGCAGAGAGCATCAGAGCGGCAGAGCTAGAGAAGTGTTTATCTAAGATGGGGGAAGATGTAACGAAGAAAACTAAAAGAGTTGTAGACGATCTTAGTCGAGGTATAGTGAACAGGCTACTTCACAGTCCAATGCAGCACTTGAGATGTGATGGGAATGATAATAGAACCCTAAGTGAGACTCTTGACAATATGCATGCTCTTAATAGGATGTTTAGCCTTGATACAGAAAAATCTGTTTTGGAAGATAAGATTAGAGCCAAAGTGGAGAAGAACCAAAAATAA 1656 43.66 MAVSTRFAAGKMEAMLLKSASSLRTSHSSQLPIVYMPMKSRKTLILRERMLDSDLVRCEVGASDVSVQSEGGNGQSNASSNISALEQLKTSAADRYTKERSSIVVIGLRVQTTPVEMREKLAIPEAEWPRAISELCSLNHIEEAALLSTCNRMEIYVLALSQHRGVKEVTEWMSKTSGLPVSEICQHRFLLYNKDATRHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAITVGKQVRTETNISSGAVSVSSAAVELALVKLPESSHASCRILVIGAGKMGKLVIKHLVAKGCKKMVVVNRTQERVAAISEELNGIEIIYKPLNEMLDCAAEANVIFTSTASESPLFLKDHVKDLPPVDHENGGSRLFIDISVPRNVGSCVNDLENVRVFNVDDLQEVVAANKEDRLRKAMEAQAIITEECKQFEAWKDSLETVPTIKKLRAYAESIRAAELEKCLSKMGEDVTKKTKRVVDDLSRGIVNRLLHSPMQHLRCDGNDNRTLSETLDNMHALNRMFSLDTEKSVLEDKIRAKVEKNQK 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10466429 10469231 + Conep04aG0131900.1 Cone4ag1273 436251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1273 551 Hamap Glutamyl-tRNA reductase [hemA]. 102 529 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone4ag1273 551 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 23 548 - -
Cone4ag1273 551 FunFam Glutamyl-tRNA reductase 261 420 - -
Cone4ag1273 551 NCBIfam glutamyl-tRNA reductase 103 510 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone4ag1273 551 Gene3D - 101 261 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone4ag1273 551 FunFam Glutamyl-tRNA reductase 102 261 - -
Cone4ag1273 551 ProSitePatterns Glutamyl-tRNA reductase signature. 199 222 IPR018214 GO:0008883(InterPro)
Cone4ag1273 551 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 106 256 IPR015895 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone4ag1273 551 Pfam Shikimate / quinate 5-dehydrogenase 278 413 IPR006151 -
Cone4ag1273 551 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 261 421 IPR036291 -
Cone4ag1273 551 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 427 531 IPR015896 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone4ag1273 551 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 425 514 IPR036453 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cone4ag1273 551 CDD NAD_bind_Glutamyl_tRNA_reduct 103 425 - -
Cone4ag1273 551 Gene3D - 262 414 - -
Cone4ag1273 551 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 102 258 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1273 K02492 - - csv:101220615 813.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1156 Cone-Chr17:8530428 Cone4ag1273 Cone-Chr4:10466429 2.21E-296 wgd
Cone20ag0573 Cone-Chr20:3275911 Cone4ag1273 Cone-Chr4:10466429 2.05E-296 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g563 . . Bda01g00924 . . . . . Cmo05g00593 . . . . . Sed04g0235 . . Bhi04g00899 Tan02g2513 Cmetu03g1732 . Hepe10g0401 . Lcy13g1452 Cla08g01187 Cam08g1652 Cec08g1228 Cco08g1347 Clacu08g1348 . Cre08g1134 Cone4ag1273 . Cone17ag1156 Cone20ag0573 . . . Cme03g01777 Blo17g00084 Blo18g00094 . Bda13g01345 Bpe02g01169 Bpe14g00500 Bma01g01362 Bma02g00099 . . . . Cma05g00567 Car05g00511 . Cpe11g00496 . . . . . . . . . . . . . . . Lsi08g01050 Csa02g02234 Chy03g01283 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007166 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 2 37