Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1276 | ATGGAGTTCAATGATGATCATGGTTTCTTGGAGGAACTATTAGCTCTAAGAAGAGACACATGGGAAGCCATTGTTCCGACAGAAATGAACGAGCTTCTAGTATCCAATGGCTTTAGTACTACTTTTGATAATGGCTTTGATCATCATCATCAAAACCATGTAAATTTTCTTCCAAATTCATCCCCACCGTTCGATCAACAAACCCTCAACTTCGACCAAGTCTACTACCCGTATAACTTTGCCAATAGTAACAACACTCATCCATTTGAGACACCCCCTTTTGGTTATCATGTTCATCAAGATAATTACCCTATTTCAAATATGGAGGAAGAAGAGCTTGAGATTCTTGCAGATGAGATTCACAATTTGGAAGTGCAGGCGAGTAGTACTAGTACTAGCAATTGCAAGATGGAGCCGGCTCAATCGCCAGATCATCAAGAAACCCGGGCAGGCGGCGGGGCCGTTTTCAACACCGCCGCCACGGCCATGTGTTACGAAAGAAAGAATCGGAGCAACAAGAAGTTGCAAGGACAACCATCCAAGAATCTGATGGCTGAAAGGAGGAGGAGAAAGCGGTTGAATGACCGCCTTTCTATGCTTAGATCCATTGTTCCTAAGATTAGCAAGATGGATAGAACTGCTATACTGGGAGATGCCATAGACTACATGAAAGAACTGCTGGAGAAGATCACTAACTTACAAAGAGAAATTCATGATGTGGGCTCTACTGATCAAATTGACATGAACCTTTTCAAAGATATCAAACCCAGTTCATTCTTAGTCAGAAATTCACCAAAGTTCGAGGTGGAAAGGAGAAGTGGAGATACTAGGATTGAGATATGCTGTGCAGGAAAACCTGGGTTGTTACTATCTACCATTAATACACTAGAAGCATTAGGCCTTGAGATTCAACAATGTGTCATCAGCTGTTTCAATGATTTTGCAATGCAAGCTTCCTGTTCAGAGGAACAGGAGCAGAGAGCATTGATAAGCCATGACGAGATAAAGCAGACATTGTTTCGGAATGCAGGGTATGGAGGAAGATGTCTGTAG | 1053 | 42.36 | MEFNDDHGFLEELLALRRDTWEAIVPTEMNELLVSNGFSTTFDNGFDHHHQNHVNFLPNSSPPFDQQTLNFDQVYYPYNFANSNNTHPFETPPFGYHVHQDNYPISNMEEEELEILADEIHNLEVQASSTSTSNCKMEPAQSPDHQETRAGGGAVFNTAATAMCYERKNRSNKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDAIDYMKELLEKITNLQREIHDVGSTDQIDMNLFKDIKPSSFLVRNSPKFEVERRSGDTRIEICCAGKPGLLLSTINTLEALGLEIQQCVISCFNDFAMQASCSEEQEQRALISHDEIKQTLFRNAGYGGRCL | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10485093 | 10486714 | - | Conep04aG0132200.1 | Cone4ag1276 | 436254 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1276 | 350 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 177 | 226 | IPR011598 | GO:0046983(InterPro) | |
Cone4ag1276 | 350 | Coils | Coil | 106 | 126 | - | - | |
Cone4ag1276 | 350 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 181 | 238 | IPR036638 | GO:0046983(InterPro) | |
Cone4ag1276 | 350 | Gene3D | - | 166 | 242 | IPR036638 | GO:0046983(InterPro) | |
Cone4ag1276 | 350 | Coils | Coil | 216 | 243 | - | - | |
Cone4ag1276 | 350 | CDD | ACT_UUR-ACR-like | 276 | 317 | - | - | |
Cone4ag1276 | 350 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 131 | 345 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Cone4ag1276 | 350 | SMART | finulus | 183 | 232 | IPR011598 | GO:0046983(InterPro) | |
Cone4ag1276 | 350 | MobiDBLite | consensus disorder prediction | 128 | 151 | - | - | |
Cone4ag1276 | 350 | Pfam | Helix-loop-helix DNA-binding domain | 184 | 226 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone16ag1029 | Cone-Chr16:9923448 | Cone4ag1276 | Cone-Chr4:10485093 | 1.21E-33 | dispersed | |
Cone18ag1463 | Cone-Chr18:9795181 | Cone4ag1276 | Cone-Chr4:10485093 | 3.44E-36 | dispersed | |
Cone2ag0011 | Cone-Chr2:91010 | Cone4ag1276 | Cone-Chr4:10485093 | 1.93E-34 | dispersed | |
Cone4ag1276 | Cone-Chr4:10485093 | Cone9ag1420 | Cone-Chr9:10535519 | 3.07E-10 | dispersed | |
Cone17ag1159 | Cone-Chr17:8553316 | Cone4ag1276 | Cone-Chr4:10485093 | 5.08E-74 | wgd | |
Cone20ag0570 | Cone-Chr20:3250453 | Cone4ag1276 | Cone-Chr4:10485093 | 1.32E-72 | wgd | |
Cone4ag1276 | Cone-Chr4:10485093 | Cone7ag0875 | Cone-Chr7:6768236 | 1.19E-234 | wgd | |
Cone4ag1276 | Cone-Chr4:10485093 | Cone8ag0189 | Cone-Chr8:991113 | 1.59E-09 | wgd | |
Cone4ag1276 | Cone-Chr4:10485093 | Cone9ag1430 | Cone-Chr9:10624747 | 8.85E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45993 | PF00173 | Cyt-b5 | 2.30E-20 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1276 | - | - | - | 0.0 |