Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1276 ATGGAGTTCAATGATGATCATGGTTTCTTGGAGGAACTATTAGCTCTAAGAAGAGACACATGGGAAGCCATTGTTCCGACAGAAATGAACGAGCTTCTAGTATCCAATGGCTTTAGTACTACTTTTGATAATGGCTTTGATCATCATCATCAAAACCATGTAAATTTTCTTCCAAATTCATCCCCACCGTTCGATCAACAAACCCTCAACTTCGACCAAGTCTACTACCCGTATAACTTTGCCAATAGTAACAACACTCATCCATTTGAGACACCCCCTTTTGGTTATCATGTTCATCAAGATAATTACCCTATTTCAAATATGGAGGAAGAAGAGCTTGAGATTCTTGCAGATGAGATTCACAATTTGGAAGTGCAGGCGAGTAGTACTAGTACTAGCAATTGCAAGATGGAGCCGGCTCAATCGCCAGATCATCAAGAAACCCGGGCAGGCGGCGGGGCCGTTTTCAACACCGCCGCCACGGCCATGTGTTACGAAAGAAAGAATCGGAGCAACAAGAAGTTGCAAGGACAACCATCCAAGAATCTGATGGCTGAAAGGAGGAGGAGAAAGCGGTTGAATGACCGCCTTTCTATGCTTAGATCCATTGTTCCTAAGATTAGCAAGATGGATAGAACTGCTATACTGGGAGATGCCATAGACTACATGAAAGAACTGCTGGAGAAGATCACTAACTTACAAAGAGAAATTCATGATGTGGGCTCTACTGATCAAATTGACATGAACCTTTTCAAAGATATCAAACCCAGTTCATTCTTAGTCAGAAATTCACCAAAGTTCGAGGTGGAAAGGAGAAGTGGAGATACTAGGATTGAGATATGCTGTGCAGGAAAACCTGGGTTGTTACTATCTACCATTAATACACTAGAAGCATTAGGCCTTGAGATTCAACAATGTGTCATCAGCTGTTTCAATGATTTTGCAATGCAAGCTTCCTGTTCAGAGGAACAGGAGCAGAGAGCATTGATAAGCCATGACGAGATAAAGCAGACATTGTTTCGGAATGCAGGGTATGGAGGAAGATGTCTGTAG 1053 42.36 MEFNDDHGFLEELLALRRDTWEAIVPTEMNELLVSNGFSTTFDNGFDHHHQNHVNFLPNSSPPFDQQTLNFDQVYYPYNFANSNNTHPFETPPFGYHVHQDNYPISNMEEEELEILADEIHNLEVQASSTSTSNCKMEPAQSPDHQETRAGGGAVFNTAATAMCYERKNRSNKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDAIDYMKELLEKITNLQREIHDVGSTDQIDMNLFKDIKPSSFLVRNSPKFEVERRSGDTRIEICCAGKPGLLLSTINTLEALGLEIQQCVISCFNDFAMQASCSEEQEQRALISHDEIKQTLFRNAGYGGRCL 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10485093 10486714 - Conep04aG0132200.1 Cone4ag1276 436254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1276 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983(InterPro)
Cone4ag1276 350 Coils Coil 106 126 - -
Cone4ag1276 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 238 IPR036638 GO:0046983(InterPro)
Cone4ag1276 350 Gene3D - 166 242 IPR036638 GO:0046983(InterPro)
Cone4ag1276 350 Coils Coil 216 243 - -
Cone4ag1276 350 CDD ACT_UUR-ACR-like 276 317 - -
Cone4ag1276 350 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 131 345 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone4ag1276 350 SMART finulus 183 232 IPR011598 GO:0046983(InterPro)
Cone4ag1276 350 MobiDBLite consensus disorder prediction 128 151 - -
Cone4ag1276 350 Pfam Helix-loop-helix DNA-binding domain 184 226 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag1029 Cone-Chr16:9923448 Cone4ag1276 Cone-Chr4:10485093 1.21E-33 dispersed
Cone18ag1463 Cone-Chr18:9795181 Cone4ag1276 Cone-Chr4:10485093 3.44E-36 dispersed
Cone2ag0011 Cone-Chr2:91010 Cone4ag1276 Cone-Chr4:10485093 1.93E-34 dispersed
Cone4ag1276 Cone-Chr4:10485093 Cone9ag1420 Cone-Chr9:10535519 3.07E-10 dispersed
Cone17ag1159 Cone-Chr17:8553316 Cone4ag1276 Cone-Chr4:10485093 5.08E-74 wgd
Cone20ag0570 Cone-Chr20:3250453 Cone4ag1276 Cone-Chr4:10485093 1.32E-72 wgd
Cone4ag1276 Cone-Chr4:10485093 Cone7ag0875 Cone-Chr7:6768236 1.19E-234 wgd
Cone4ag1276 Cone-Chr4:10485093 Cone8ag0189 Cone-Chr8:991113 1.59E-09 wgd
Cone4ag1276 Cone-Chr4:10485093 Cone9ag1430 Cone-Chr9:10624747 8.85E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45993 PF00173 Cyt-b5 2.30E-20 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1276 - - - 0.0