Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1277 ATGTCGAATATTACTATTTATACCCCGACTTTATTCTATTATCCCTCATTTGTCCCCACTCCCTCGTTAAACTTCCATTACATCGCTTTGCAACGTCCTCAACCCCCTCTTCTTCCTCTTTCTCTCCGTTCGCAAACGCCGACGCGATCTCATCCCGCTGTTCGCTGTTCCTCTTCTCGCTCCTCAGAAATGGATTCTCCATCAGCCCAAAATCTGTATCCATTGCACCGTTGTAAAACTATCCACCTGGTGAGACACGCCCAAGGAATTCACAATGTAGAAGGTGAAAAGGACCATAGTGCATACATGTCGTATGATCTTTTTGACGCACACCTTACCCCACTCGGTTGGCAACAGGTTGAGAATCTTCGCAAGCATGTTCAAGCATGTGGACTTTCTAAGAAAATTGAGTTAGTGATTACCTCCCCATTGTTAAGGACTATTCAAACGGCCGTTGGAGTATTTGGTGGTGAAGGATATAAGAATGGGATAAATGAACCGCCACTAATGGTGGAGGATGCAGGGAACAGCGATCATCCTGCAATTTCAAGTCTCAATTGCCCTCCATTTTTGGCCGTAGAGCTTTGTCGGGAACATTTGGGAGTCCATCCATGTGATAAGAGAAGAAGCATCAGCGAGTATCGGCCTCTTTTTCCTGCTCTAGATTTTTCACTGGTAGAGAATGATGATGATATCTTGTGGAAGGCAGATATTAGAGAGAAAAACGAAGAGGTTGCAGCCAGGGGACTGAAGTTTGTGAATTGGCTGTGGACTAGGGAGGAGAAGGAGATTGCAATTGTTACCCACAGTGGGTTCTTGTACCATACACTCAATGCTTTTGGGAAGGATTGTCATCCATCCATACAGAGTGAAATAAGCACACATTTTAACAACTGCGAGCTTCGTTCAATGGTGATTGTTGATAAAAGTATGTTGGGATCAGATTCCTCGACCACAAACTACGGTGGAAAAGTTCCTCGCGGGCTTGATCTTCCAAGTGATGTTGCCGCCGAGAAGCATCCAGGGAAAGGAGCTCCCAAGTAA 1044 45.31 MSNITIYTPTLFYYPSFVPTPSLNFHYIALQRPQPPLLPLSLRSQTPTRSHPAVRCSSSRSSEMDSPSAQNLYPLHRCKTIHLVRHAQGIHNVEGEKDHSAYMSYDLFDAHLTPLGWQQVENLRKHVQACGLSKKIELVITSPLLRTIQTAVGVFGGEGYKNGINEPPLMVEDAGNSDHPAISSLNCPPFLAVELCREHLGVHPCDKRRSISEYRPLFPALDFSLVENDDDILWKADIREKNEEVAARGLKFVNWLWTREEKEIAIVTHSGFLYHTLNAFGKDCHPSIQSEISTHFNNCELRSMVIVDKSMLGSDSSTTNYGGKVPRGLDLPSDVAAEKHPGKGAPK 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10502271 10505901 + Conep04aG0132300.1 Cone4ag1277 436255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1277 347 MobiDBLite consensus disorder prediction 317 347 - -
Cone4ag1277 347 MobiDBLite consensus disorder prediction 333 347 - -
Cone4ag1277 347 MobiDBLite consensus disorder prediction 39 69 - -
Cone4ag1277 347 SUPERFAMILY Phosphoglycerate mutase-like 79 309 IPR029033 -
Cone4ag1277 347 SMART PGAM_5 80 276 IPR013078 -
Cone4ag1277 347 CDD HP_PGM_like 80 151 IPR013078 -
Cone4ag1277 347 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 72 306 IPR050275 GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cone4ag1277 347 Pfam Histidine phosphatase superfamily (branch 1) 81 154 IPR013078 -
Cone4ag1277 347 Gene3D - 78 327 IPR029033 -
Cone4ag1277 347 FunFam Phosphoglycerate mutase-like protein 1 75 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1277 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1013 Cone-Chr12:8548500 Cone4ag1277 Cone-Chr4:10502271 1.48E-149 wgd
Cone4ag1277 Cone-Chr4:10502271 Cone7ag0874 Cone-Chr7:6753274 1.79E-194 wgd
Cone4ag1277 Cone-Chr4:10502271 Cone8ag1040 Cone-Chr8:9587058 1.58E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g558 . . . . Bpe02g00151 . . Bma01g02575 . . . Cma09g00605 . . . Cpe06g00466 . . . . . . . . . . . . . . . Cone4ag1277 Cone7ag0874 . . Lsi04g02298 Csa03g04517 Chy04g00186 . . . Bda11g00812 . . Bpe05g00448 . . Sed05g1536 . Cmo09g00593 . . . Car09g00537 . . Bhi09g02533 Tan01g3880 Cmetu04g2852 . Hepe01g2188 Mch11g0734 . Cla11g01447 Cam11g1500 Cec11g1537 Cco11g1533 Clacu11g1664 Cmu11g1480 Cre11g1900 . . . Cme04g00216
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000410 2 5 1 2 2 0 4 4 2 4 2 4 4 4 4 4 4 4 3 4 4 3 3 3 3 2 5 16 9 2 113