Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1281 | ATGGGGAGGGGAAAGATTGTGATAAGGAGAATTGACAATTCCACTAGCAGGCAGGTGACGTTCTCGAAGCGGAGGAGTGGATTACTGAAGAAGGCGAAGGAGCTTGCGATCCTGTGCGACGCTGAGGTAGGAGTCATCATCTTCTCCAGTACTGGAAAGCTCTATGATTTCTCAAACACCAGCATGAAATCAATACTTGAACGGTACAACAAGTCTAAAGAGGATCAGCTACTTGGGAATTCAACTTCCGAGGTGAAGTTCTGGCAAAGAGAAGTAGCAACGTTGCGGCAGCAATTACAAAGCTTGCAAGAAAACCATCGCAAAATGATGGGCGAAGAGCTTTCTGGTTTGAGCACCAAAGAATTGCAGAATCTGGAGAACCAATTGGAAATGAGTCTCCATGGTGTCCGAATGAAAAAGGAGCAACTATTTATGGATGAAATTCAAGAGCTAAGTCAGAAGGGGAACCTTCTTCACCAGGAAAATGTGGAATTATACAAAAAGGTAAACCTGGTTCGTCAAGAAAATAATGAACTACAAAAAAAGGTCTATGCAACAAGGAATGTAAATGGAGAAAACCTTATCACATATGGTTTAGGCATTGGAGATGACTCACATGGATCTATCAACCTTCAGCTTAGCCAGCCACGGCAACAAGATCATGAGGCACCAGCAAGACCTACAAAATTGGGACCCAAGTTACGAAATGTTGACACTGTACCTGCATATACCAAGCTTGATGTGATAAACAAGAAGGAATACGAGTGGTGCAGATGTTTTAGCGAGTACTAG | 792 | 43.06 | MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVIIFSSTGKLYDFSNTSMKSILERYNKSKEDQLLGNSTSEVKFWQREVATLRQQLQSLQENHRKMMGEELSGLSTKELQNLENQLEMSLHGVRMKKEQLFMDEIQELSQKGNLLHQENVELYKKVNLVRQENNELQKKVYATRNVNGENLITYGLGIGDDSHGSINLQLSQPRQQDHEAPARPTKLGPKLRNVDTVPAYTKLDVINKKEYEWCRCFSEY | 263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10526697 | 10540216 | - | Conep04aG0132700.1 | Cone4ag1281 | 436259 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1281 | 263 | MobiDBLite | consensus disorder prediction | 208 | 234 | - | - | |
Cone4ag1281 | 263 | Coils | Coil | 85 | 112 | - | - | |
Cone4ag1281 | 263 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cone4ag1281 | 263 | Gene3D | - | 13 | 90 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone4ag1281 | 263 | FunFam | MADS-box transcription factor MADS-MC | 13 | 84 | - | - | |
Cone4ag1281 | 263 | Coils | Coil | 162 | 182 | - | - | |
Cone4ag1281 | 263 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone4ag1281 | 263 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone4ag1281 | 263 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone4ag1281 | 263 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone4ag1281 | 263 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone4ag1281 | 263 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone4ag1281 | 263 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone4ag1281 | 263 | SUPERFAMILY | SRF-like | 2 | 89 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone4ag1281 | 263 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 219 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cone4ag1281 | 263 | ProSiteProfiles | K-box domain profile. | 85 | 175 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cone4ag1281 | 263 | Pfam | K-box region | 81 | 169 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag1087 | Cone-Chr10:7536536 | Cone4ag1281 | Cone-Chr4:10526697 | 2.58E-75 | dispersed | |
Cone2ag0486 | Cone-Chr2:2633642 | Cone4ag1281 | Cone-Chr4:10526697 | 4.46E-09 | dispersed | |
Cone3ag1075 | Cone-Chr3:29393090 | Cone4ag1281 | Cone-Chr4:10526697 | 1.01E-13 | dispersed | |
Cone4ag1281 | Cone-Chr4:10526697 | Cone6ag0933 | Cone-Chr6:4798470 | 1.44E-41 | dispersed | |
Cone3ag0043 | Cone-Chr3:268129 | Cone4ag1281 | Cone-Chr4:10526697 | 6.11E-36 | transposed | |
Cone7ag0872 | Cone-Chr7:6725586 | Cone4ag1281 | Cone-Chr4:10526697 | 3.42E-45 | transposed | |
Cone17ag1176 | Cone-Chr17:8627228 | Cone4ag1281 | Cone-Chr4:10526697 | 1.14E-28 | wgd | |
Cone20ag0564 | Cone-Chr20:3151511 | Cone4ag1281 | Cone-Chr4:10526697 | 2.76E-80 | wgd | |
Cone4ag1281 | Cone-Chr4:10526697 | Cone7ag0871 | Cone-Chr7:6703827 | 1.78E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45994 | PF03446 | NAD_binding_2 | 2.30E-42 | CL0063 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1281 | K09264 | - | rcu:8280333 | 352.058 |