Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1281 ATGGGGAGGGGAAAGATTGTGATAAGGAGAATTGACAATTCCACTAGCAGGCAGGTGACGTTCTCGAAGCGGAGGAGTGGATTACTGAAGAAGGCGAAGGAGCTTGCGATCCTGTGCGACGCTGAGGTAGGAGTCATCATCTTCTCCAGTACTGGAAAGCTCTATGATTTCTCAAACACCAGCATGAAATCAATACTTGAACGGTACAACAAGTCTAAAGAGGATCAGCTACTTGGGAATTCAACTTCCGAGGTGAAGTTCTGGCAAAGAGAAGTAGCAACGTTGCGGCAGCAATTACAAAGCTTGCAAGAAAACCATCGCAAAATGATGGGCGAAGAGCTTTCTGGTTTGAGCACCAAAGAATTGCAGAATCTGGAGAACCAATTGGAAATGAGTCTCCATGGTGTCCGAATGAAAAAGGAGCAACTATTTATGGATGAAATTCAAGAGCTAAGTCAGAAGGGGAACCTTCTTCACCAGGAAAATGTGGAATTATACAAAAAGGTAAACCTGGTTCGTCAAGAAAATAATGAACTACAAAAAAAGGTCTATGCAACAAGGAATGTAAATGGAGAAAACCTTATCACATATGGTTTAGGCATTGGAGATGACTCACATGGATCTATCAACCTTCAGCTTAGCCAGCCACGGCAACAAGATCATGAGGCACCAGCAAGACCTACAAAATTGGGACCCAAGTTACGAAATGTTGACACTGTACCTGCATATACCAAGCTTGATGTGATAAACAAGAAGGAATACGAGTGGTGCAGATGTTTTAGCGAGTACTAG 792 43.06 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVIIFSSTGKLYDFSNTSMKSILERYNKSKEDQLLGNSTSEVKFWQREVATLRQQLQSLQENHRKMMGEELSGLSTKELQNLENQLEMSLHGVRMKKEQLFMDEIQELSQKGNLLHQENVELYKKVNLVRQENNELQKKVYATRNVNGENLITYGLGIGDDSHGSINLQLSQPRQQDHEAPARPTKLGPKLRNVDTVPAYTKLDVINKKEYEWCRCFSEY 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10526697 10540216 - Conep04aG0132700.1 Cone4ag1281 436259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1281 263 MobiDBLite consensus disorder prediction 208 234 - -
Cone4ag1281 263 Coils Coil 85 112 - -
Cone4ag1281 263 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone4ag1281 263 Gene3D - 13 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1281 263 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Cone4ag1281 263 Coils Coil 162 182 - -
Cone4ag1281 263 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1281 263 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1281 263 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1281 263 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1281 263 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1281 263 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1281 263 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1281 263 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1281 263 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 219 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone4ag1281 263 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone4ag1281 263 Pfam K-box region 81 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1087 Cone-Chr10:7536536 Cone4ag1281 Cone-Chr4:10526697 2.58E-75 dispersed
Cone2ag0486 Cone-Chr2:2633642 Cone4ag1281 Cone-Chr4:10526697 4.46E-09 dispersed
Cone3ag1075 Cone-Chr3:29393090 Cone4ag1281 Cone-Chr4:10526697 1.01E-13 dispersed
Cone4ag1281 Cone-Chr4:10526697 Cone6ag0933 Cone-Chr6:4798470 1.44E-41 dispersed
Cone3ag0043 Cone-Chr3:268129 Cone4ag1281 Cone-Chr4:10526697 6.11E-36 transposed
Cone7ag0872 Cone-Chr7:6725586 Cone4ag1281 Cone-Chr4:10526697 3.42E-45 transposed
Cone17ag1176 Cone-Chr17:8627228 Cone4ag1281 Cone-Chr4:10526697 1.14E-28 wgd
Cone20ag0564 Cone-Chr20:3151511 Cone4ag1281 Cone-Chr4:10526697 2.76E-80 wgd
Cone4ag1281 Cone-Chr4:10526697 Cone7ag0871 Cone-Chr7:6703827 1.78E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45994 PF03446 NAD_binding_2 2.30E-42 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1281 K09264 - rcu:8280333 352.058