Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1283 | ATGTCTGGAGGAGTGAGATTACATTACGTTGGTCGTCATGTGGTGATAGATAATGGCATACTGCAAGTAACATTATCAAATCCAGATGGAATTGTTACTGGAATAAGATATAATGGTGTCGACAATTTGCTTGAAGTTCTTAACAAAGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGTGCACCGGGGATCAAGGGAACATTTGATGTGATTCAAGGAACGAGTTTCAGGGTTTTAGTGGAAAACGAGGAACAGGTGGAGCTCTCATTTACAAGAATGTGGGATATCTCCCAAGAAGGAAAGTTTGTTCCTTTAAACATAGACAAAAGGTTTATTATGCTACGTGGCTCCTCTGGCTTCTACTCTTATGCTATTTACGAGCACTTGGCAGAGTGGCCTGAGTTTGATCTTGGCGAAACTAGGTTCACTTTTAAACTAAGAAAAGACAAGTTTCGTTACATGGCTATAGCAGATAACAGGCAGAGATTCATGCCCCAGCCTGAAGACCGATTACCCGGAAGATGCCAAGCGCTGGCCTATCCAGAAGCTGTGCTGCTCGTCAATCCCACAAATCCGGATCACAAAGGCGAGGTGGATGACAAATACCAATACTCCTGTGATAACCAAGACATAAGGGTTCATGGTTGGATATGTGCGGCAAACCCTCCCATGGGGTTCTGGCAGATCACACCCAGTAATGAATTTCGATCCGGTGGGCCCCTCAAACAGAACCTGACATCACATGTGGGGCCTACTACCCTTGCAATGTTTCTTAGTAATCATTACGCGGGAAAAGATATGGAGCAAAAAGTTAGAGCTGGGGAGCCATGGAAAAAGGTTTTTGGCCCTGTTTTTCTTTATCTTAATTCCACCTCACTTGGAGATGACCCGTTCTGGTTGTGGGAGGATGCCAAAATACAGATGATGACTGAAGTCCAAAAGTGGCCATACAGTTTCCCAGCTTCTGAGGATTTCCCAAAGTTAGATCAAAGGGGTAGTGTTCGTGGTCGGCTACTTGTTTTGGACAGGCATATTAGTAATGACTTAATACCAGCAAGTGGTGCCTATGTTGGTTTGGCCCCACCAGGAGCAGTAGGATCATGGCAAACGGAATGGAAGGATTATCAATTCTGGGTAAATGCAGATGACAGTGGCTATTTCACTATCAACCACATACGAGCCGGTGACTATAATCTTTACGCATGGGTCCCGGGTTTTATAGGAGATTATAGATATGATGCTGTCATCTCCATAAACTGTGGATCATGCATTGAAATGGGTGATCTCGTATATGAGCCTCCAAGACATGGGCCCACTTTGTGGGAAATAGGCATTCCTGATCGTTCTGCTGCAGAATTCTACGTCCCTGATCCCAATCCATGTCATGTTAATAAACTCTTCGTTAATCATCCTGACAGGTTTAGGCAGTATGGTTTGTGGGACAGATATACCGATTTATATCCTGATTCAGATTTGGTTTATACTATTGGTATCAGCGATTACAGCAAGGATTGGTTCTTTGCTCAGGTTGCCAGGAAGACAGCTGATAATGCATTTCTAGGAACTACTTGGCAGATTAAATTTAAACTTGAAAGTATGGTTCGAAAAAGTACTTACAAACTAAGAGTGGCAATTGCAGCAGCAACACTAGCTGAAGTGCAGGTTCGGGTTAATGACCCAGGAGCAAGGCGGCCTTTATTTACTACAGGGCTGATAGGGAGAGACAATGCAGTAGCAAGACACGGGATTCACGGGCTTTATAGGCTATATAATGTGGATTTACCAGGCTCCCATCTAGTTGAAGGGGATAATACACTATACCTGACACAACCTCGAAACAATGGCCCTTTCCAAGGGGTTATGTATGATTATATTCGCCTAGAAGGTCCCCCACCGTGCGGTTAA | 1908 | 43.97 | MSGGVRLHYVGRHVVIDNGILQVTLSNPDGIVTGIRYNGVDNLLEVLNKESNRGYWDLVWSAPGIKGTFDVIQGTSFRVLVENEEQVELSFTRMWDISQEGKFVPLNIDKRFIMLRGSSGFYSYAIYEHLAEWPEFDLGETRFTFKLRKDKFRYMAIADNRQRFMPQPEDRLPGRCQALAYPEAVLLVNPTNPDHKGEVDDKYQYSCDNQDIRVHGWICAANPPMGFWQITPSNEFRSGGPLKQNLTSHVGPTTLAMFLSNHYAGKDMEQKVRAGEPWKKVFGPVFLYLNSTSLGDDPFWLWEDAKIQMMTEVQKWPYSFPASEDFPKLDQRGSVRGRLLVLDRHISNDLIPASGAYVGLAPPGAVGSWQTEWKDYQFWVNADDSGYFTINHIRAGDYNLYAWVPGFIGDYRYDAVISINCGSCIEMGDLVYEPPRHGPTLWEIGIPDRSAAEFYVPDPNPCHVNKLFVNHPDRFRQYGLWDRYTDLYPDSDLVYTIGISDYSKDWFFAQVARKTADNAFLGTTWQIKFKLESMVRKSTYKLRVAIAAATLAEVQVRVNDPGARRPLFTTGLIGRDNAVARHGIHGLYRLYNVDLPGSHLVEGDNTLYLTQPRNNGPFQGVMYDYIRLEGPPPCG | 635 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10549015 | 10553133 | + | Conep04aG0132900.1 | Cone4ag1283 | 436261 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1283 | 635 | CDD | RGL4_M | 331 | 430 | IPR029413 | - | |
Cone4ag1283 | 635 | SUPERFAMILY | Galactose-binding domain-like | 438 | 629 | IPR008979 | - | |
Cone4ag1283 | 635 | CDD | RGL4_N | 11 | 293 | - | - | |
Cone4ag1283 | 635 | Pfam | Polysaccharide lyase family 4, domain II | 354 | 425 | IPR029413 | - | |
Cone4ag1283 | 635 | Pfam | Polysaccharide lyase family 4, domain III | 440 | 628 | IPR029411 | - | |
Cone4ag1283 | 635 | SUPERFAMILY | Galactose mutarotase-like | 12 | 295 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Cone4ag1283 | 635 | SUPERFAMILY | Starch-binding domain-like | 329 | 418 | IPR013784 | GO:0030246(InterPro) | |
Cone4ag1283 | 635 | CDD | RGL4_C | 442 | 629 | - | - | |
Cone4ag1283 | 635 | Gene3D | - | 330 | 416 | - | - | |
Cone4ag1283 | 635 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 4 | 632 | IPR051850 | - | |
Cone4ag1283 | 635 | Pfam | Rhamnogalacturonate lyase family | 7 | 199 | IPR010325 | - | |
Cone4ag1283 | 635 | Gene3D | - | 438 | 629 | - | - | |
Cone4ag1283 | 635 | Gene3D | - | 7 | 304 | IPR014718 | GO:0030246(InterPro) | |
Cone4ag1283 | 635 | FunFam | Rhamnogalacturonate lyase B | 328 | 427 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone14ag1147 | Cone-Chr14:9495685 | Cone4ag1283 | Cone-Chr4:10549015 | 2.35E-277 | dispersed | |
Cone4ag1283 | Cone-Chr4:10549015 | Cone4ag1284 | Cone-Chr4:10555096 | 3.02E-257 | tandem | |
Cone17ag1186 | Cone-Chr17:8698186 | Cone4ag1283 | Cone-Chr4:10549015 | 0 | wgd | |
Cone4ag1283 | Cone-Chr4:10549015 | Cone6ag1513 | Cone-Chr6:11957773 | 2.75E-283 | wgd | |
Cone4ag1283 | Cone-Chr4:10549015 | Cone7ag0869 | Cone-Chr7:6678678 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1283 | K18195 | - | mdm:103441741 | 1074.69 |