Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1283 ATGTCTGGAGGAGTGAGATTACATTACGTTGGTCGTCATGTGGTGATAGATAATGGCATACTGCAAGTAACATTATCAAATCCAGATGGAATTGTTACTGGAATAAGATATAATGGTGTCGACAATTTGCTTGAAGTTCTTAACAAAGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGTGCACCGGGGATCAAGGGAACATTTGATGTGATTCAAGGAACGAGTTTCAGGGTTTTAGTGGAAAACGAGGAACAGGTGGAGCTCTCATTTACAAGAATGTGGGATATCTCCCAAGAAGGAAAGTTTGTTCCTTTAAACATAGACAAAAGGTTTATTATGCTACGTGGCTCCTCTGGCTTCTACTCTTATGCTATTTACGAGCACTTGGCAGAGTGGCCTGAGTTTGATCTTGGCGAAACTAGGTTCACTTTTAAACTAAGAAAAGACAAGTTTCGTTACATGGCTATAGCAGATAACAGGCAGAGATTCATGCCCCAGCCTGAAGACCGATTACCCGGAAGATGCCAAGCGCTGGCCTATCCAGAAGCTGTGCTGCTCGTCAATCCCACAAATCCGGATCACAAAGGCGAGGTGGATGACAAATACCAATACTCCTGTGATAACCAAGACATAAGGGTTCATGGTTGGATATGTGCGGCAAACCCTCCCATGGGGTTCTGGCAGATCACACCCAGTAATGAATTTCGATCCGGTGGGCCCCTCAAACAGAACCTGACATCACATGTGGGGCCTACTACCCTTGCAATGTTTCTTAGTAATCATTACGCGGGAAAAGATATGGAGCAAAAAGTTAGAGCTGGGGAGCCATGGAAAAAGGTTTTTGGCCCTGTTTTTCTTTATCTTAATTCCACCTCACTTGGAGATGACCCGTTCTGGTTGTGGGAGGATGCCAAAATACAGATGATGACTGAAGTCCAAAAGTGGCCATACAGTTTCCCAGCTTCTGAGGATTTCCCAAAGTTAGATCAAAGGGGTAGTGTTCGTGGTCGGCTACTTGTTTTGGACAGGCATATTAGTAATGACTTAATACCAGCAAGTGGTGCCTATGTTGGTTTGGCCCCACCAGGAGCAGTAGGATCATGGCAAACGGAATGGAAGGATTATCAATTCTGGGTAAATGCAGATGACAGTGGCTATTTCACTATCAACCACATACGAGCCGGTGACTATAATCTTTACGCATGGGTCCCGGGTTTTATAGGAGATTATAGATATGATGCTGTCATCTCCATAAACTGTGGATCATGCATTGAAATGGGTGATCTCGTATATGAGCCTCCAAGACATGGGCCCACTTTGTGGGAAATAGGCATTCCTGATCGTTCTGCTGCAGAATTCTACGTCCCTGATCCCAATCCATGTCATGTTAATAAACTCTTCGTTAATCATCCTGACAGGTTTAGGCAGTATGGTTTGTGGGACAGATATACCGATTTATATCCTGATTCAGATTTGGTTTATACTATTGGTATCAGCGATTACAGCAAGGATTGGTTCTTTGCTCAGGTTGCCAGGAAGACAGCTGATAATGCATTTCTAGGAACTACTTGGCAGATTAAATTTAAACTTGAAAGTATGGTTCGAAAAAGTACTTACAAACTAAGAGTGGCAATTGCAGCAGCAACACTAGCTGAAGTGCAGGTTCGGGTTAATGACCCAGGAGCAAGGCGGCCTTTATTTACTACAGGGCTGATAGGGAGAGACAATGCAGTAGCAAGACACGGGATTCACGGGCTTTATAGGCTATATAATGTGGATTTACCAGGCTCCCATCTAGTTGAAGGGGATAATACACTATACCTGACACAACCTCGAAACAATGGCCCTTTCCAAGGGGTTATGTATGATTATATTCGCCTAGAAGGTCCCCCACCGTGCGGTTAA 1908 43.97 MSGGVRLHYVGRHVVIDNGILQVTLSNPDGIVTGIRYNGVDNLLEVLNKESNRGYWDLVWSAPGIKGTFDVIQGTSFRVLVENEEQVELSFTRMWDISQEGKFVPLNIDKRFIMLRGSSGFYSYAIYEHLAEWPEFDLGETRFTFKLRKDKFRYMAIADNRQRFMPQPEDRLPGRCQALAYPEAVLLVNPTNPDHKGEVDDKYQYSCDNQDIRVHGWICAANPPMGFWQITPSNEFRSGGPLKQNLTSHVGPTTLAMFLSNHYAGKDMEQKVRAGEPWKKVFGPVFLYLNSTSLGDDPFWLWEDAKIQMMTEVQKWPYSFPASEDFPKLDQRGSVRGRLLVLDRHISNDLIPASGAYVGLAPPGAVGSWQTEWKDYQFWVNADDSGYFTINHIRAGDYNLYAWVPGFIGDYRYDAVISINCGSCIEMGDLVYEPPRHGPTLWEIGIPDRSAAEFYVPDPNPCHVNKLFVNHPDRFRQYGLWDRYTDLYPDSDLVYTIGISDYSKDWFFAQVARKTADNAFLGTTWQIKFKLESMVRKSTYKLRVAIAAATLAEVQVRVNDPGARRPLFTTGLIGRDNAVARHGIHGLYRLYNVDLPGSHLVEGDNTLYLTQPRNNGPFQGVMYDYIRLEGPPPCG 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10549015 10553133 + Conep04aG0132900.1 Cone4ag1283 436261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1283 635 CDD RGL4_M 331 430 IPR029413 -
Cone4ag1283 635 SUPERFAMILY Galactose-binding domain-like 438 629 IPR008979 -
Cone4ag1283 635 CDD RGL4_N 11 293 - -
Cone4ag1283 635 Pfam Polysaccharide lyase family 4, domain II 354 425 IPR029413 -
Cone4ag1283 635 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Cone4ag1283 635 SUPERFAMILY Galactose mutarotase-like 12 295 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cone4ag1283 635 SUPERFAMILY Starch-binding domain-like 329 418 IPR013784 GO:0030246(InterPro)
Cone4ag1283 635 CDD RGL4_C 442 629 - -
Cone4ag1283 635 Gene3D - 330 416 - -
Cone4ag1283 635 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 632 IPR051850 -
Cone4ag1283 635 Pfam Rhamnogalacturonate lyase family 7 199 IPR010325 -
Cone4ag1283 635 Gene3D - 438 629 - -
Cone4ag1283 635 Gene3D - 7 304 IPR014718 GO:0030246(InterPro)
Cone4ag1283 635 FunFam Rhamnogalacturonate lyase B 328 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1147 Cone-Chr14:9495685 Cone4ag1283 Cone-Chr4:10549015 2.35E-277 dispersed
Cone4ag1283 Cone-Chr4:10549015 Cone4ag1284 Cone-Chr4:10555096 3.02E-257 tandem
Cone17ag1186 Cone-Chr17:8698186 Cone4ag1283 Cone-Chr4:10549015 0 wgd
Cone4ag1283 Cone-Chr4:10549015 Cone6ag1513 Cone-Chr6:11957773 2.75E-283 wgd
Cone4ag1283 Cone-Chr4:10549015 Cone7ag0869 Cone-Chr7:6678678 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1283 K18195 - mdm:103441741 1074.69